LLMs Think with DAGs: Probing the Latent Graph Structure of Reasoning

Large Language Models (LLMs) explore problems through chain-of-thought, but this exploration is buried in unstructured prose. On high-stakes tasks, users cannot tell which steps are well-supported, which alternatives were seriously considered, or how the final conclusion compares to those the model discarded. We propose a framework that ensembles the reasoning structure, not just the answers, of multiple LLMs by weighted merging of Directed Acyclic Graphs (DAGs) extracted from reasoning chains. We weight each step by how many traces independently attest to it, to return "Consensus Reasoning". Across six benchmarks spanning statutory interpretation, graduate-level science, narrative multi-hop reasoning, and first-order logic, our ensemble outperforms a matched-budget majority-vote baseline, with a maximum accuracy gain of 3.1% on MuSR-MM (narrative multi-hop reasoning). On a single model, the framework matches or exceeds self-consistency at the same trace budget while additionally exposing an inspectable consensus reasoning graph. Ensemble weights correlate with LLM-judge rankings of reasoning quality at Spearman $ρ= 0.30$-$0.51$, and consensus subgraphs are preferred over alternatives leading to the majority-vote answer in 54.4-65.4% of head-to-head comparisons across five of six datasets. We observe that our framework can also be used to analyze diverse reasoning perspectives for a problem.

Large reasoning models (LRMs) produce reasoning traces with non-linear structures, such as backtracking and self-correction, that complicate the evaluation and monitoring of the reasoning process. We introduce ReasoningFlow, a framework that captures the discourse structures of LRM reasoning traces into fine-grained directed acyclic graphs (DAGs). We develop and validate our annotation schema through careful manual annotation of 31 traces (2.1k steps), achieving high inter-annotator agreement, then scale to automatic annotation of 1,260 traces (247.7k steps) spanning three tasks (math, science, argumentation) and five models (Qwen2.5-32B-Inst, QwQ-32B, DeepSeek-V3, DeepSeek-R1, GPT-oss-120B). By analyzing ReasoningFlow graphs, we find: (1) LRMs exhibit structurally similar traces, despite being trained from different base models and potentially non-overlapping post-training data. (2) ReasoningFlow reveals diverse fine-grained reasoning behaviors (e.g., local verification, self-reflection, and assumptions) that can be used for better reasoning trace monitorability. (3) In LRMs, most of the erroneous steps are not used to derive final answers. (4) Mechanistic causal dependencies between steps do not reflect the language-level discourse structure. We release the dataset and code in: https://github.com/jinulee-v/reasoningflow.

This work characterizes large language models' chain-of-thought generation as a structured trajectory through representation space. We show that mathematical reasoning traverses functionally ordered, step-specific subspaces that become increasingly separable with layer depth. This structure already exists in base models, while reasoning training primarily accelerates convergence toward termination-related subspaces rather than introducing new representational organization. While early reasoning steps follow similar trajectories, correct and incorrect solutions diverge systematically at late stages. This late-stage divergence enables mid-reasoning prediction of final-answer correctness with ROC-AUC up to 0.87. Furthermore, we introduce trajectory-based steering, an inference-time intervention framework that enables reasoning correction and length control based on derived ideal trajectories. Together, these results establish reasoning trajectories as a geometric lens for interpreting, predicting, and controlling LLM reasoning behavior.