HyperRAG: Reasoning N-ary Facts over Hypergraphs for Retrieval Augmented Generation

While retrieval-augmented generation (RAG) has proven effective at giving LLMs access to external knowledge, mainstream dense-retrieval implementations remain inherently limited in handling structured constraints and multi-hop reasoning. Graph-based methods address this by constructing knowledge graphs offline, but they often fragment semantics, incur high maintenance, and complicate incremental updates. We propose SAG (SQL-Retrieval Augmented Generation), a structured retrieval architecture that organizes documents into an event-entity index without building a global knowledge graph. SAG represents each chunk as a semantically complete event paired with its entities, forming a latent hyperedge that preserves n-ary relations without decomposing them into triples. At query time, SAG treats shared entities as join keys to connect related chunks. This dynamically yields a query-scoped neighborhood of events, and yet every piece of evidence remains the original chunk throughout. Experiments on HotpotQA, 2WikiMultiHopQA, and MuSiQue show that SAG achieves the best retrieval and end-to-end QA performance on every benchmark, with gains that widen as reasoning-chain complexity increases. On MuSiQue, where multi-hop evidence chaining is most demanding, SAG reaches 80.36% Recall@5, outperforming the strongest baseline by 11.52 points. This work paves the way for knowledge infrastructure that enables LLM agents to retrieve and reason over continually growing organizational knowledge.

Graph Retrieval-Augmented Generation (GraphRAG) is dominated by a retrieve-then-reason paradigm, where context is retrieved using heuristics and then reasoned over. Such methods struggle to adapt to the query-specific logic required for complex multi-hop tasks, often accumulating irrelevant context or missing correct relational paths. We propose DotRAG, a training-free GraphRAG framework that reformulates retrieval as a reasoning process over paths. Our approach generates query-conditioned constraints that guide graph exploration, prune irrelevant regions, and iteratively discover relational paths without relying on explicit step-by-step reasoning chains. We introduce Division of Thought (DOT), an abstraction that decomposes retrieval into localized search spaces and adapts the search strategy to each query. DotRAG achieves SOTA performance on MetaQA and UltraDomain, with consistent gains on multi-hop tasks, demonstrating the effectiveness of reasoning-guided retrieval.

Large language models (LLMs) have shown strong capabilities, with retrieval-augmented generation (RAG) supporting complex multi-hop reasoning by retrieving evidence distributed across documents. Graph-based approaches exploit connections among evidence, and hypergraph-based retrieval further preserves higher-order entity associations within documents and connects documents through shared entities. However, existing hypergraph retrievers often rely on predefined structural expansion or diffusion, which may miss query-dependent interactions needed to identify relevant evidence. They also leave connections among retrieved evidence implicit, requiring LLMs to reconstruct these connections before reasoning. Therefore, we propose HyperReCo, a framework for retrieving and connecting evidence with a hypergraph neural network (HyperGNN). We represent each document as a hyperedge over its extracted entities, with shared entities connecting the hyperedges. Through hypergraph message passing with joint supervision over documents and entities, the HyperGNN learns query-dependent interactions to retrieve complementary evidence. We further introduce Gradient-Guided Hyper-Path Decoding (GGHD), which uses gradient attribution to interpret the learned interactions and translate them into explicit hyper-paths that help LLMs combine complementary facts for multi-hop reasoning. Experiments on six benchmarks show that HyperReCo achieves the best retrieval performance among the compared methods on all three multi-hop QA datasets, together with strong downstream QA performance. Case studies and further analyses demonstrate the utility of decoded hyper-paths for connecting retrieved evidence.