Hypergraph Neural Networks

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Overview

Hypergraph neural networks study how to learn from data where one relationship can connect several entities at once, such as a group of brain regions, items, or clinical concepts. Common approaches propagate messages through node–hyperedge incidence, use attention or spectral operators, and increasingly add dynamic hypergraphs, diffusion models, or self-supervised learning. They are applied to tasks including node classification, recommendation, forecasting, medical analysis, and scientific modeling, with evaluations spanning standard hypergraph benchmarks and domain-specific datasets. A central open question is whether gains come from genuine higher-order information rather than stronger propagation or other modeling choices; efficiency, over-smoothing, heterophily, and incomplete or noisy structure also remain challenges.

Latest papers

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58 papers7 papers in the last four weeks, down 30% on the four weeks before. 0.0% of all new papers.

  1. QORH: Learning Query-Specific Ordered Rule Hypergraphs for Inductive Knowledge Graph Link Prediction

    Oct 13, 2026Naixing XuKnowledge GraphsKG Completion

    School of Software, Shandong University, Jinan, China

  2. PANDA: Prior-guided Attentional Dual-path Architecture

    Oct 9, 2026Rishabh Jain, Federico Belotti, Stefano Coniglio +2Hypergraph Neural NetworksHigher-Order GNNs

    University of Cambridge, UK · University of Bergamo, Italy · Independent Researcher

  3. Do Higher-Order Models Win for Higher-Order Reasons? Rethinking Performance Gains in Hypergraph Learning

    Oct 6, 2026Fanchen Bu, Fan Li, Geon Lee +4Benchmark DesignHypergraph Neural Networks

    KAIST · UNSW Sydney · University of Oxford

  4. Interpretable Hypergraph Learning via Neural Additive Models

    Oct 5, 2026Shihan Feng, Xin Zheng, Shiyi Yang +3Neural Network InterpretabilityHypergraph Neural Networks

    School of Data and Information Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA · Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA · Department of Electrical and Computer Engineering, Illinois Institute of Technology, Chicago, IL 60616, USA +2

  5. HyperFuse: Fast Self-Supervised Node Embeddings for Attributed Hypergraphs

    Oct 2, 2026Megha P, Harshit Kumar, Srajan Agarwal +3Hypergraph LearningHypergraph Neural Networks

    School of Data Science, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, 695551, Kerala, India. · Department of Mathematics and Statistics, Indian Institute of Science Education and Research Kolkata, Mohanpur, 741246, West Bengal, India. · Institute of Computer Science, University of Rostock, Rostock, 18051, Germany. +1

  6. Spatiotemporal Hyperedges for EEG Seizure Detection and Prediction

    Sep 29, 2026Hyunju Kim, Sheo Yon Jhin, Noseong Park +1EEG Seizure DetectionGraph Neural Networks

    School of Computational Science and Engineering Georgia Institute of Technology Atlanta, GA, USA · School of Computing Korea Advanced Institute of Science and Technology Daejeon, Republic of Korea

  7. Information Bottleneck-Guided Adaptive Hypergraph Transformer for Brain Disease Diagnosis

    Sep 29, 2026Jingxi Feng, Xudong Chen, Yifan Zhang +5Medical DiagnosisInformation Bottleneck

  8. AutoHGNN: Robust and Efficient Neural Architecture Search for Hypergraph Neural Networks

    Sep 27, 2026Sirui Li, Pietro Liò b, Xinsheng Li +2Hypergraph Neural NetworksNeural Architecture Search

    Faculty of Electrical Engineering and Computer Science, Ningbo University, Ningbo, 315211, Zhejiang, China · Department of Computer Science and Technology, University of Cambridge, Cambridge, CB2 1TN, Cambridgeshire, United Kingdom

  9. CalibHyper: Chance-Corrected Relational Hypergraphs for Few-Shot Molecular Property Prediction

    Sep 27, 2026Linyu Li, Zhi Jin, Yuanpeng He +7Multi-Label ClassificationFew-Shot Learning

    School of Computer Science, Peking University · Key Laboratory of High Confidence Software Technologies, Peking University, Ministry of Education · School of Computer Science, Wuhan University +1

  10. HyperReCo: Retrieving and Connecting Evidence with Hypergraph Neural Networks for LLM Multi-hop Reasoning

    Sep 26, 2026Zicheng Zhao, Linhao Luo, Junnan Dong +4Graph Retrieval-Augmented GenerationMulti-Hop QA

    Shanghai Jiao Tong University · Singapore University of Technology and Design · Monash University +3

  11. An Accurate and Interpretable Hyper Graph Neural Network for GBM Survival Prediction

    Sep 19, 2026Mushahid IntesumCancer Survival PredictionMultimodal Survival Analysis

  12. HyperAMS-Net: Adaptive Multi-Scale Spatial Hypergraph Network for Brain Disorder Classification

    Sep 17, 2026Proloy Kumar Mondal, Md Kamran Hussin Chowdhury, Hoi Leong LeeMedical DiagnosisMulti-Scale Feature Fusion

    Department of Computer Science and Engineering, University of North Texas, Denton, Texas, USA · Inje University, Gimhae-si, Republic of Korea · Faculty of Electronic Engineering and Technology, Universiti Malaysia Perlis, Arau, Malaysia

  13. Hypergraph-Regularized Gramian Volumes for Multimodal Retrieval

    Sep 14, 2026Anindya Nag, Ambuj Mehrish, Sebastiano VasconMultimodal IRCross-Modal Alignment

    Department of Environmental Science, Informatics and Statistics Ca’ Foscari University of Venice, Italy

  14. Multi-granularity Adaptive Hypergraph Representation Learning via Granular-ball

    Sep 4, 2026Sen Zhao, Yifan Guan, Jinyuan Ni +6Hypergraph LearningHypergraph Neural Networks

    Chongqing University of Posts and Telecommunications

  15. H2Table: Hierarchical Hypergraph-Enhanced Large Language Models for Complex Table Reasoning

    Sep 1, 2026Jia Ling, Yangfan Wang, Chen Tang +4Table QAHierarchical Representation Learning

    Harbin Institute of Technology · AI Research Center, Midea Group (Shanghai) Co., Ltd. · Changchun University of Science and Technology +1

  16. Why Multi-Layer Message Passing Works: Completeness Theory for Graph Neural Network Interatomic Potentials

    Sep 1, 2026Pingbing Ming, Han WangMachine Learning Interatomic PotentialsGNN Expressivity

    SKLMS, Institute of Computational Mathematics and Scientific/Engineering Computing, AMSS, Chinese Academy of Sciences, No. 55, East Road Zhong-Guan-Cun, Beijing 100190, China · National Key Laboratory of Computational Physics, Institute of Applied Physics and Computational Mathematics, Fenghao East Road 2, Beijing 100094, P.R. China, and HEDPS, CAPT, College of Engineering, Peking University, Beijing 100871, P.R. China

  17. Higher Structures in Deep Learning

    Aug 31, 2026Michael L. Roberts, Carlos Zapata Carratalá. Nicholas J. Cooper, Lijun Chen +2Multilayer PerceptronsHypergraph Neural Networks

    Combinatorial Labs · SEMF/Independent Researcher · University of Colorado Boulder

  18. Hyper-Fold: Exploring the Expressive Limit of Sequence-Geometry Learning for Proteins via Hypergraph Modeling

    Aug 29, 2026Yifan Feng, Guanjie Cheng, Shihui Ying +2Protein Function PredictionHypergraph Neural Networks

    1{School of Software, BNRist, THUIBCS}, Tsinghua University, Beijing 100084, China · School of Software Technology, Zhejiang University, Ningbo 315100, China · 3Shanghai Institute of Applied Mathematics and Mechanics, School of Mechanics and Engineering Science, Shanghai University, Shanghai 200072, China +1

  19. Beyond Pairwise Graphs in Science: Hypergraph Adaptive Wavelet Operators for Parametric PDEs

    Aug 28, 2026Rajat Sarkar, Venkataramana Runkana, Souvik ChakrabortyPDE Operator LearningHypergraph Neural Networks

    Department of Applied Mechanics Indian Institute of Technology Delhi New Delhi, 110016, India · TCS Research Tata Consultancy Services, India · Department of Applied Mechanics Yardi School of Artificial Intelligence (ScAI) Indian Institute of Technology Delhi New Delhi, 110016, India

  20. Towards Trustworthy Hypergraph Neural Networks under Label Noise

    Aug 5, 2026Mengyao Zhou, Zhiheng Zhou, Xiao Han +1Graph Structure LearningHypergraph Neural Networks

    Academy of Mathematics and Systems Science, Chinese Academy of Sciences and also with the University of Chinese Academy of Sciences, Beijing 100190, China · School of Mathematics and Statistics, Shandong University, Weihai, Shandong 264209, China · School of Artificial Intelligence, Beihang University, Beijing 100191,China

  21. FLASH: Efficient Impact Fall Detection with Unified Hypergraph State-Space Model

    Jul 28, 2026Tresor Y. Koffi, Youssef Mourchid, Yohan DupuisFall DetectionHypergraph Neural Networks

    CESI, CESI LINEACT, France

  22. MissHyper: Restoring Clinical Synchronicity in Missingness-Guided Hypergraph Forecasting

    Jul 24, 2026Mingyi Ma, Qingxiong TanIrregular Time-Series ModelingMultivariate Time Series Forecasting

    Academy of Advanced Interdisciplinary Studies Wuhan University · Institute for Mathematics & Artificial Intelligence Wuhan University

  23. AUCH-Net: Action Unit-Based Consistency-Aware Hypergraph Network for Cross-Domain Few-Shot Facial Expression Recognition

    Jul 23, 2026Xinhan Qiu, Yan Yan, Rui Zhu +2Few-Shot LearningCross-Domain Transfer Learning

    Key Laboratory of Multimedia Trusted Perception and Efficient Computing, Ministry of Education of China, School of Informatics, Xiamen University, Xiamen 361102, China · Fujian Key Laboratory of Pattern Recognition and Image Understanding, Xiamen University of Technology, Xiamen 361024, China · Bayes Business School, City St George’s, University of London, London, EC1Y 8TZ, UK +1

  24. Spectral Higher-Order Neural Networks Have Sharp Expressivity Bounds

    Jul 21, 2026Gianluca Peri, Diego Febbe, Duccio FanelliHypergraph Neural NetworksNeural Network Expressivity

    Department of Physics, University of Florence & INFN, Italy

  25. From Diffusion to Reaction-Diffusion: A Dynamical-Systems View of Oversmoothing in Hypergraph Neural Networks

    Jul 17, 2026Zhiheng Zhou, Mengyao Zhou, Yancheng Chen +3Hypergraph Neural NetworksHypergraph Learning

    School of Mathematics and Statistics, Shandong University, Weihai, Shandong 264209, China · Academy of Mathematics and Systems Science, Chinese Academy of Sciences and also with the University of Chinese Academy of Sciences, Beijing 100190, China

  26. Dynamic Manipulation Hypergraphs for HAR: Beyond Pairwise Relations: Dynamic Manipulation Hypergraphs for Vision-Based Human Activity Recognition

    Jul 15, 2026Fatemeh ZiaeetabarHuman Activity RecognitionHypergraph Neural Networks

    Department of Computer Science, School of Mathematics, Statistics and Computer Science, College of Science, University of Tehran, Tehran, Tehran, Iran.

  27. Dual-Correlation Hypergraph Network for Unaligned RGBT Video Object Detection and A Large-scale Benchmark

    Jul 9, 2026Qishun Wang, Yapeng Li, Zhengzheng Tu +2Cross-Modal AlignmentVideo Object Detection

    Anhui Provincial Key Laboratory of Multimodal Cognitive Computation, School of Computer Science and Technology, Anhui University, Hefei 230601, China

  28. Hypergraph Neural Stochastic Diffusion: An SDE Framework for Uncertainty Estimation

    Jul 8, 2026Zhiheng Zhou, Mengyao Zhou, Dengyi Zhao +2Stochastic Differential EquationsUncertainty Quantification

    School of Mathematics and Statistics, Shandong University, Weihai, Shandong 264209, China · Academy of Mathematics and Systems Science, Chinese Academy of Sciences and also with the University of Chinese Academy of Sciences, Beijing 100190, China

  29. SABER: A Semantic-Aligned Brain Network Analysis Framework via Multi-scale Hypergraphs

    Jul 2, 2026Yidan Xu, Xiangmin Han, Rundong Xue +1Medical DiagnosisHypergraph Neural Networks

    Hangzhou Dianzi University, China · Tsinghua University, China · Xi’an Jiaotong University, China

  30. EHHN: An Event-driven Heterogeneous Hypergraph Network for Object-Centric Next Activity Prediction

    Jul 2, 2026Jiaxing Wang, Kaitao Chen, Zhubin Han +4Temporal GNNsProcess Mining

    College of Computer Science and Technology, Zhejiang University of Technology, 310023, Hangzhou, China · University of Southern Queensland, Toowoomba, QLD 4350, Australia