Algorithmic Blindness in Large Language Models: A Calibration Study of Performance Prediction
Organizations: Manipal Institute of Technology Bengaluru
Abstract
Large language models (LLMs) demonstrate remarkable breadth of knowledge, yet their ability to reason about computational processes remains poorly understood. Closing this gap matters for practitioners who rely on LLMs to guide algorithm selection and deployment. We address this limitation using causal discovery as a testbed and evaluate eight frontier LLMs against ground truth derived from algorithm executions. We find systematic, near-total failure across models. The predicted ranges are far wider than true confidence intervals yet still fail to contain the true algorithmic mean in most cases. Most models perform worse than random guessing. The best model's marginal improvement points to benchmark memorization rather than principled reasoning. We term this failure algorithmic blindness and argue it reflects a fundamental gap between declarative knowledge about algorithms and calibrated procedural prediction.
Figures & tables
| Algorithm | Benchmark Cov. | Synthetic Cov. | Difference |
| FCI | 25.0% | 43.8% | |
| NOTEARS | 44.4% | 68.8% | |
| PC | 27.8% | 43.8% | |
| LiNGAM | 47.2% | 31.2% |
| Method | Coverage (%) | Mean Score |
| Random Baseline | 36.5 | 0.409 |
| Heuristic Baseline | 32.7 | 0.356 |
| Claude | 39.4 | 0.442 |
| GPT-5 | 15.4 | 0.217 |
| DeepSeek-Think | 14.9 | 0.174 |
| DeepSeek | 14.4 | 0.198 |
| Dataset | Type | Mean Dist. | Agree.% |
| Asia | Benchmark | 2.20 | 44.2 |
| Cancer | Benchmark | 1.88 | 34.8 |
| Earthquake | Benchmark | 2.01 | 43.5 |
| Survey | Benchmark | 2.13 | 43.3 |
| Sachs | Benchmark | 4.55 | 47.8 |
| Child | Benchmark | 8.62 | 46.2 |
Appendix figures & tables7 assets
Supplementary material from the paper’s appendix.
Appendix
| Metric | Claude | DeepSeek | DeepSeek-Think | Gemini 3 | GPT-5 | LLaMA | Qwen | Qwen-Think |
| F1 | 17.1% | 18.3% | 14.0% | 13.9% | 13.9% | 7.5% | 5.3% | 23.0% |
| Precision | 15.4% | 19.6% | 15.3% | 13.9% | 11.9% | 6.4% | 4.1% | 22.7% |
| Recall | 18.5% | 18.8% | 14.0% | 15.4% | 15.8% | 8.3% | 6.2% | 23.2% |
| SHD | 19.4% | 41.5% | 36.4% | 23.0% | 26.5% | 37.1% | 30.4% | 35.1% |
| Overall | 17.6% | 24.6% | 19.9% | 16.5% | 17.0% | 14.8% | 11.5% | 26.0% |
| Asia (Benchmark, 8 nodes) | Synthetic-12 (Synthetic, 12 nodes) | ||||||||
| Algorithm | Metric | Algo Mean | LLM Range | Coverage | Algorithm | Metric | Algo Mean | LLM Range | Coverage |
| PC | Precision | 0.474 | [0.703, 0.874] | 12.5% | PC | Precision | 0.470 | [0.688, 0.860] | 12.5% |
| PC | Recall | 0.777 | [0.626, 0.811] | 87.5% | PC | Recall | 0.723 | [0.613, 0.797] | 75.0% |
| PC | F1 | 0.588 | [0.664, 0.831] | 0.0% | PC | F1 | 0.569 | [0.650, 0.815] | 0.0% |
| PC | SHD | 15.0 | [2.1, 6.2] | 0.0% | PC | SHD | 32.8 | [4.9, 13.6] | 0.0% |
| FCI | Precision | 0.474 | [0.666, 0.853] | 12.5% | FCI | Precision | 0.472 | [0.616, 0.805] | 12.5% |
| Dataset | Type | Nodes | Coverage (%) |
| Asia | Benchmark | 8 | 23.4 |
| Cancer | Benchmark | 5 | 21.9 |
| Synthetic-12 | Synthetic | 12 | 20.3 |
| Alarm | Benchmark | 37 | 18.8 |
| Insurance | Benchmark | 27 | 18.8 |
| Survey | Benchmark | 6 | 18.0 |
| Algorithm | Avg Synthetic Boost | Range Variation |
| NOTEARS | 56.9% | |
| FCI | 34.7% | |
| PC | 24.3% | |
| LiNGAM | 44.4% |
| Algorithm | Precision | Recall | F1 | SHD |
| PC | 0.335 | 0.868 | 0.427 | 130.36 |
| FCI | 0.343 | 0.839 | 0.426 | 122.67 |
| LiNGAM | 0.304 | 0.405 | 0.301 | 101.00 |
| NOTEARS | 0.341 | 0.248 | 0.299 | 36.77 |
| Comparison | Mean Difference | Corrected p-value | Cohen’s d | Significant |
| FCI vs LiNGAM | +0.125 | 0.013 | 0.842 | Yes |
| LiNGAM vs PC | -0.126 | 0.010 | -0.877 | Yes |
| FCI vs NOTEARS | +0.127 | 1.000 | 0.489 | No |
| FCI vs PC | -0.002 | 1.000 | -0.132 | No |
| LiNGAM vs NOTEARS | +0.003 | 1.000 | 0.009 | No |
| NOTEARS vs PC | -0.128 | 1.000 | -0.495 | No |
Algorithmic Reasoning
Algorithmic reasoning studies how AI systems learn, execute, and generalize procedures for solving structured problems.
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