NESTOR: A Nested MOE-based Neural Operator for Large-Scale PDE Pre-Training

Large-scale pre-training has improved the generalization of neural operators across diverse PDEs. However, existing PDE foundation models still struggle with heterogeneous dynamics, where shared representations may cause knowledge interference, while mixture-of-experts (MoE) architectures suffer from increasing expert redundancy. We propose SPEAR, a spectral-disentangled MoE neural operator with knowledge-guided expert aggregation for large-scale PDE pre-training. SPEAR decouples latent features into low- and high-frequency components, enabling shared modeling of transferable dynamics and specialized learning of PDE-specific patterns. To address expert redundancy, we design a knowledge-guided expert aggregation strategy that measures expert similarity from dataset-specific learned knowledge and routing preferences, enabling the identification and consolidation of similar experts. Experiments on twelve PDE datasets and multiple downstream benchmarks demonstrate superior performance in pre-training, fine-tuning, and transfer learning. Furthermore, our aggregation strategy reduces the number of experts by 50% while maintaining or improving prediction accuracy, achieving a balance between model efficiency and generalization for PDE foundation models.

Pre-training neural operators on diverse partial differential equation (PDE) datasets has emerged as a promising direction for building general-purpose surrogate models in scientific machine learning. However, the inherent complexity and structural diversity of PDE solution operators make multi-PDE pre-training fundamentally challenging. Existing methods mainly address this by increasing model capacity, while leaving the target solution operators unchanged. Inspired by classical numerical analysis, we instead propose to transform complex and diverse solution operators into simpler, better-aligned forms that are easier to model jointly. Since the optimal transformation varies across PDE types, it must be adaptive and input-dependent, allowing a single neural operator to approximate an entire family of operators. We instantiate this idea as AOT-POT (adaptive operator-transformation for pre-training operator transformer), which expands hidden representations into multiple parallel streams, adaptively aggregates and redistributes them before and after each sub-layer, and mixes streams through Sinkhorn-projected doubly stochastic matrices for stable training. These mechanisms together reshape diverse solution operators into a unified form that can be effectively modeled by a single architecture. Empirically, AOT-POT achieves state-of-the-art performance on 12 PDE benchmarks with only 3% additional parameters, reducing relative L2 error by up to 77.6% (40.9% on average). Fine-tuning AOT-POT further reduces L2 error by up to 92% on in-domain PDEs and 89% on out-of-domain PDEs (unseen types during pre-training), demonstrating that adaptive operator transformation is an effective and complementary direction for advancing PDE foundation models beyond simply scaling model capacity.

Transformer-based neural operators have achieved substantial progress in solving Partial Differential Equations (PDEs) by projecting spatial observations into compact latent tokens and learning physical interactions in latent spaces. However, we reveal that existing learnable projection mechanisms cannot ensure stable and balanced assignments from observation points to latent tokens, causing some latent tokens to be over-assigned while others remain underutilized. This limitation further restricts the design of hierarchical architectures, as assignment imbalance is continuously inherited and amplified across latent spaces, eventually causing severe token collapse in deeper spaces. To address these issues, we propose MoNo (Multiscale Optimal Transport Neural Operator), a progressive multiscale neural operator that efficiently solves PDEs on general geometries through stable latent-space construction. At its core is CoTAP (Cross-scale Optimal Transport Assignment and Projection), a novel latent-space construction method that formulates cross-space assignment between adjacent spaces as an entropy-regularized optimal transport problem, thereby constructing balanced bidirectional projections and stable latent spaces. CoTAP also ensures stable information transfer across multiple latent spaces, further enabling multiscale architectures on general geometries, which in turn support more efficient learning of long-range physical interactions. Extensive experiments demonstrate that MoNo outperforms existing state-of-the-art neural operators in both prediction performance and computational efficiency. Code is available at https://github.com/ZijiangY1116/MoNo.