Dissecting Chronos: Sparse Autoencoders Reveal Causal Feature Hierarchies in Time Series Foundation Models
Organizations: Rochester Institute of Technology
Abstract
Time series foundation models (TSFMs) are increasingly deployed in high-stakes domains, yet their internal representations remain opaque. We present the first application of sparse autoencoders (SAEs) to a TSFM, training TopK SAEs on activations of Chronos-T5-Large (710M parameters) across six layers. Through 392 single-feature ablation experiments, we establish that every ablated feature produces a positive CRPS degradation, confirming causal relevance. Our analysis reveals a depth-dependent hierarchy: early encoder layers encode low-level frequency features, the mid-encoder concentrates causally critical change-detection features, and the final encoder compresses a rich but less causally important taxonomy of temporal concepts. The most critical features reside in the mid-encoder (max single-feature Delta CRPS = 38.61), not in the semantically richest final encoder layer, where progressive ablation paradoxically improves forecast quality. These findings demonstrate that mechanistic interpretability transfers effectively to TSFMs and that Chronos-T5 relies on abrupt-dynamics detection rather than periodic pattern recognition.
Figures & tables
| Layer | Mean | Med. | Max | Std | +Frac | Max/Med | |
|---|---|---|---|---|---|---|---|
| Enc. block 5 | 64 | 3.05 | 0.95 | 26.32 | 5.12 | 1.00 | 27.7 |
| Enc. block 11 | 64 | 5.15 | 1.26 | 38.61 | 6.95 | 1.00 | 30.5 |
| Enc. block 23 | 64 | 3.73 | 2.98 | 11.65 | 2.07 | 1.00 | 3.9 |
| Enc. block 23 † | 200 | 2.37 | 2.37 | 2.44 | 0.03 | 1.00 | 1.03 |
| Concept | Enc 5 | Enc 11 | Enc 23 | Dec 11 | Dec 11 ca | Dec 23 |
|---|---|---|---|---|---|---|
| Seasonality | 12 | 45 | 1,439 | 33 | 91 | 64 |
| Level shift | 66 | 1,024 | 1,097 | 28 | 37 | 28 |
| Level shift | 46 | – | 210 | 14 | 26 | 60 |
| Trend | 48 | 220 | 228 | 13 | 12 | 37 |
| Trend | 11 | 16 | 89 | – | 13 | 32 |
| Freq. high | 97 | 91 | 668 | 16 | – | 24 |
Time-Series Foundation Models
Time-series foundation models are pretrained sequence models designed to transfer across forecasting, classification, anomaly detection, and other temporal tasks.
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