Feature-level Interaction Explanations in Multimodal Transformers

Multimodal large language models (MLLMs) increasingly support high-stakes decision making by combining complementary information from images and text. While existing explainability methods identify influential image regions or text tokens, they cannot answer a fundamental question: which modality drives a prediction? Consequently, a model may produce the correct output while relying on the wrong source of evidence, masking shortcut learning and unsafe reasoning. We formulate modality attribution as a complementary explainability objective for multimodal foundation models and propose Counterfactual Modality Attribution (CMA), the first framework for quantifying modality-level contributions in MLLMs. CMA generates image-only, text-only, and joint multimodal counterfactuals using coupled diffusion priors and converts them into principled modality attribution scores through a cooperative game-theoretic formulation based on Shapley values. We evaluate CMA on controlled synthetic benchmarks with known ground-truth modality reliance and on a real-world multimodal clinical dataset. CMA correctly identifies the decision-driving modality in 98% of controlled cases and consistently outperforms baselines, revealing failures of cross-modal reasoning that remain invisible to predictive accuracy alone. Our results establish modality attribution as a complementary dimension of explainability beyond feature attribution, providing a principled framework for auditing multimodal foundation models in safety-critical applications.

With the increasing development of Vision-Language Models, it becomes imperative that their predictions are readily explainable to relevant stakeholders. However, the field of explainability has not kept pace with the multimodal surge. While recent Multimodal Explainable AI (MxAI) methods generate explanations to attribute the interaction between different modalities, current evaluation protocols lack the ground truth required to distinguish between true cross-modal reasoning (e.g., spatial composition) and shallow cross-modal shortcuts (e.g., Bag-of-Words attribute matching). It remains unknown whether MxAI methods faithfully capture synergistic interactions or merely hallucinate reasoning on models acting as simple feature detectors. In this paper, we introduce GridVQA-X, the first diagnostic framework specifically designed to evaluate cross-modal explainability. Unlike natural datasets, GridVQA-X leverages a closed-world synthesis logic to generate unique, mathematically guaranteed explanations. We utilize this controlled environment to train paired ground-truth models on identical architectures: $M_{\text{pure}}$, which learns robust spatial-relational reasoning and $M_{\text{spur}}$, which is structurally forced to rely on cross-modal shortcuts. This behavioral divergence creates a rigorous testbed: a faithful explainer must report distinct reasoning pathways for each model. Our findings reveal that widely used methods fail to distinguish between models relying on genuine spatial-relational reasoning and those exploiting cross-modal shortcuts, highlighting a critical gap in capturing true cross-modal synergy and misrepresenting how multimodal models actually make decisions.

Multimodal Large Language Models (MLLMs) effectively integrate text and audio to interpret context in complex interactive dialogues. However, the internal mechanisms by which heterogeneous modalities influence model behavior remain opaque. While Shapley Values (SV) provide a robust, model-agnostic framework for local explainability in text-based NLP, their extension to multimodal data is hindered by cross-channel dependencies, intricate dialogue structures, and the prohibitive computational complexity of dense audio representations. In this work, we formalize a multimodal extension of the Shapley Value framework, treating discrete text tokens and aligned audio segments as cooperative features. To ensure computational feasibility, we deploy a suite of efficient estimation strategies: exact SV computation for low-dimensional inputs and sampling-based approximations - including Monte Carlo permutations and stratified sampling with Neyman-optimal allocation - to minimize variance under constrained computational budgets. To resolve the granularity mismatch between modalities, we propose Spectrogram-Guided Phonetic Alignment (SGPA), a novel preprocessing method that maps high-frequency audio streams to interpretable, word-aligned segments. Our contribution is twofold: first, we provide an open-source, model-agnostic Python package and a companion GUI for the computation and interactive visualization of multimodal attributions. Second, we evaluate our framework using curated subsets of the VoiceBench and Infinity Instruct datasets across diverse multilingual scenarios. Our experimental results reveal that input modality is a primary driver of attribution volatility and demonstrate that standard syntactic importance proxies often fail to predict model attention in multimodal, cross-lingual contexts.