ES-Merging: Biological MLLM Merging via Embedding Space Signals

Multimodal large language models (MLLMs) achieve strong performance by jointly processing inputs from multiple modalities, such as vision, audio, and language. However, building such models or extending them to new modalities often requires large paired datasets and substantial computational resources. Since many pretrained MLLMs (e.g., vision-language or audio-language) are publicly available, we ask whether we can merge them into a single MLLM that can handle multiple modalities? Merging MLLMs with different input modalities remains challenging, partly because of differences in the learned representations and interference between their parameter spaces. To address these challenges, we propose Singular Subspace Alignment and Merging (SSAM), a training-free model merging framework that unifies independently trained specialist MLLMs into a single model capable of handling any combination of input modalities. SSAM maintains modality-specific parameter updates separately and identifies a shared low-rank subspace for language-related parameter updates, aligns them within this subspace, and merges them to preserve complementary knowledge while minimizing parameter interference. Without using any multimodal training data, SSAM achieves state-of-the-art performance across four datasets, surpassing prior training-free merging methods and even jointly trained multimodal models. These results demonstrate that aligning models in parameter space provides a scalable and resource-efficient alternative to conventional joint multimodal training.

Model merging combines the parameters of multiple neural networks into a single model without additional training. As fine-tuned large language models (LLMs) proliferate, merging offers a computationally efficient alternative to ensembles and full retraining, enabling practitioners to compose specialized capabilities at minimal cost. This survey examines model merging in the LLM era through the FUSE taxonomy, organized along Foundations, Unification Strategies, Scenarios, and Ecosystem. We first establish the theoretical underpinnings of merging, including loss landscape geometry and mode connectivity, then systematically review the algorithmic space spanning weight averaging, task vector arithmetic, sparsification-enhanced methods, mixture-of-experts architectures, and evolutionary optimization. We further examine downstream applications across multi-task learning, safety alignment, domain specialization, and federated learning, and survey the supporting ecosystem of tools and evaluation benchmarks. Finally, we identify key open challenges and future directions, aiming to equip researchers and practitioners with a structured foundation for advancing model merging.

Multimodal Large Language Models (MLLMs) rely on multimodal pre-training over diverse data sources, where different datasets often induce complementary cross-modal alignment capabilities. Model merging provides a cost-effective mechanism for integrating multiple expert MLLMs with complementary strengths into a unified model. However, existing model merging research mainly focuses on post-finetuning scenarios, leaving the pre-training stage largely unexplored. We argue that the core of MLLM pre-training lies in establishing effective cross-modal alignment, which bridges visual and textual representations into a unified semantic space. Motivated by this insight, we introduce the post-alignment merging task, which aims to integrate cross-modal alignment capabilities learned from heterogeneous multimodal pre-training. This setting introduces two key challenges: cross-domain parameter interference, where parameter updates learned from different data distributions conflict during merging, and layer-wise alignment contribution disparity, where different layers and projectors contribute unevenly to cross-modal alignment. To address them, we propose PivotMerge, a post-alignment merging framework for cross-modal projectors. PivotMerge incorporates two key components: Shared-space Decomposition and Filtering, which disentangles shared alignment patterns from domain-specific variations and suppresses conflicting directions, and Alignment-guided Layer-wise Merging, which assigns layer-specific merging weights based on differing alignment contributions. We construct systematic CC12M-based post-alignment merging scenarios for evaluation. Extensive experiments on multiple multimodal benchmarks show that PivotMerge consistently outperforms existing baselines, demonstrating its effectiveness and generalization ability.