Laya: A LeJEPA Approach to EEG via Latent Prediction over Reconstruction

Electroencephalography (EEG) foundation models aim to learn reusable representations from large-scale unlabeled recordings. A common pretraining strategy is masked waveform reconstruction, but applying supervision directly to noisy EEG may encourage models to recover predictable background activity, acquisition effects, and artifacts rather than neural structure that transfers across tasks. This raises a central question: what should an EEG foundation model predict to learn transferable representations? We introduce EEG-JEPA a structured latent-prediction framework for EEG foundation modeling. Rather than reconstructing masked voltage samples, a masked context encoder and predictor infer contextual latent states produced by an exponential-moving-average target encoder that observes the complete input. EEG-JEPA organizes target design along three complementary dimensions: target content specifies what representation is predicted, target support specifies where prediction occurs over structured electrode--time regions through Neurotopology-Aware Multi-scale Electrode-Temporal Masking (N-MET), and target depth specifies at which encoder layers supervision is applied. Together, these designs shift EEG pretraining from recovering missing measurements to inferring latent states from structured electrode--time context. We evaluate EEG-JEPA through controlled objective comparisons, frozen multitask transfer, and full fine-tuning. Under the same backbone, pretraining corpus, and training duration, EEG-JEPA improves the 14-task frozen macro balanced accuracy from 40.49% to 50.42% over CBraMod-style masked waveform reconstruction. Multi-source continuation further raises this result to 52.94%, the highest average among the EEG foundation models evaluated on EEG-FM-Bench. Under protocol-matched full fine-tuning, EEG-JEPA also improves the nine-task average balanced accuracy from 68.98% to 70.65%.

Electroencephalography (EEG) provides a non-invasive measure of ongoing neural activity, but building general-purpose EEG models remains challenging due to the heterogeneity of subjects, devices, and electrode montages. Existing EEG foundation models predominantly rely on reconstruction-based objectives defined on the observed signal, which contains both neural and non-neural components. We introduce SPERA (Spherical Prior EEG Representation Architecture), an EEG foundation model that adopts the joint-embedding predictive architecture (JEPA) to predict in latent space. SPERA introduces a Legendre-polynomial spatial prior, incorporated into attention to encode varying scalp electrode geometries. Two further components adapt the model to EEG: factorized temporal and spatial attention interleaved with periodic full-attention blocks, and a relational spectral regularizer aligning latent similarity structure with spectral views. Pretrained on approximately 80,000 hours of EEG from 29,048 subjects across 106 datasets, SPERA achieves the highest average balanced accuracy across nine downstream tasks spanning clinical, cognitive, and BCI applications. SPERA further exhibits strong parameter efficiency under linear probing and robustness across varying recording conditions, suggesting its potential as a general-purpose backbone for diverse EEG analyses.

Recent advances in EEG foundation models have demonstrated the potential of large-scale pretraining to enable generalizable neural decoding across subjects, recording environments, and datasets. However, dominant pretraining paradigms face key challenges: masked autoencoding tends to prioritize low-level signal reconstruction over task-relevant semantics, while autoregressive modeling creates a mismatch between continuous neural dynamics and discrete token spaces. To address these challenges, new strategies are needed to effectively align continuous EEG representations with natural-language semantics and enable their integration with large language models. Accordingly, we propose Brain Latent Predictive Model (BLPM), an EEG-language foundation model that reformulates heterogeneous EEG decoding tasks as a continuous semantic embedding prediction problem. BLPM introduces a Continuous EEG Latent Predictive (CELP) encoder that learns transferable representations through latent target prediction. Building on these representations, a Multi-Query Semantic Decomposition (MQSD) module extracts task-relevant information and aligns continuous EEG representations with textual semantics within a shared latent space according to their semantic relationships. Experiments across multiple benchmarks demonstrate consistent generalization performance across diverse tasks, establishing continuous latent semantic prediction as an effective paradigm for EEG-language foundation models.