The Causal Impact of Tool Affordance on Safety Alignment in LLM Agents

Safety alignment for large language models (LLMs) in conversational settings is largely framed around whether to answer or refuse a request. In agentic settings, however, the same models must decide whether to act as permission-critical evidence emerges during execution. This creates a distinct challenge: apparent risk, action permissibility, and task competence are easily confounded, making agentic over-refusal difficult to distinguish from ordinary task failure. To address this, we introduce AgentBound, the first four-way counterfactual generation-and-evaluation framework for tool-using agent safety. AgentBound transforms the same executable workflow by independently varying apparent risk and action permissibility, enabling controlled comparisons of risky-looking but authorized tasks and routine-looking but unauthorized tasks. These comparisons jointly diagnose over-refusal and unsafe compliance while controlling for task competence. We instantiate AgentBound as a human-validated 4,000-task evaluation suite with trajectory-based and post-state-based judgments. Across 17 model and harness configurations, high safety frequently coexists with poor authorized-task completion: GPT-5.5 blocks 99.5% of routine-looking unauthorized actions yet completes only 28.7% of risky-looking authorized tasks. We further train a lightweight runtime calibration module that improves authorized-task completion by 18.2% on average across 10 evaluated configurations, while improving unsafe-action blocking by 5.4% on average. These show that effective agentic alignment requires action decisions to track permission-relevant execution evidence, rather than refusal strength alone.

Large language models deployed as agents increasingly interact with external systems through tool calls--actions with real-world consequences that text outputs alone do not carry. Safety evaluations, however, overwhelmingly measure text-level refusal behavior, leaving a critical question unanswered: does alignment that suppresses harmful text also suppress harmful actions? We introduce the GAP benchmark, a systematic evaluation framework that measures divergence between text-level safety and tool-call-level safety in LLM agents. We test six frontier models across six regulated domains (pharmaceutical, financial, educational, employment, legal, and infrastructure), seven jailbreak scenarios per domain, three system prompt conditions (neutral, safety-reinforced, and tool-encouraging), and two prompt variants, producing 17,420 analysis-ready datapoints. Our central finding is that text safety does not transfer to tool-call safety. Across all six models, we observe instances where the model's text output refuses a harmful request while its tool calls simultaneously execute the forbidden action--a divergence we formalize as the GAP metric. Even under safety-reinforced system prompts, 219 such cases persist across all six models. System prompt wording exerts substantial influence on tool-call behavior: TC-safe rates span 21 percentage points for the most robust model and 57 for the most prompt-sensitive, with 16 of 18 pairwise ablation comparisons remaining significant after Bonferroni correction. Runtime governance contracts reduce information leakage in all six models but produce no detectable deterrent effect on forbidden tool-call attempts themselves. These results demonstrate that text-only safety evaluations are insufficient for assessing agent behavior and that tool-call safety requires dedicated measurement and mitigation.

Safety alignment in LLMs aims to align models with human values, but which values take precedence when they conflict? We investigate this question in the context of tool-calling LLM agents deployed in regulated industries, where agents processing confidential documents may encounter content that triggers safety-trained values (e.g., public welfare) that conflict with deployment-context instructions (e.g., internal logging). To empirically verify this phenomenon, we build a benchmark of 128 scenarios across 16 domains. We find that safety-aligned open-source models override their deployment instructions up to 43.4% of the time, engaging in whistleblowing, data exfiltration, and evidence tampering when processing documents that suggest organizational wrongdoing. We also find that abliteration reduces rates of external whistleblowing. These results reveal a fundamental tension in pluralistic alignment, where the same safety training that protects users can cause agents to act against deployment instructions in ways that create unpredictable liability risks. We release our benchmark as a framework to support evaluation of agent behavior under competing legitimate interests.