HighlightBench: Benchmarking Markup-Driven Table Reasoning in Scientific Documents

Large Language Models (LLMs) and Vision-Language Models (VLMs) are increasingly evaluated on table reasoning tasks, but the role of table representation remains under-explored. In practice, the same table content may appear in different structural formats, such as HTML, Markdown, and LaTeX, or as rendered images. However, existing evaluations often let content, format, layout, and modality vary together, making it difficult to isolate representation effects. We introduce TABVERSE, a controlled multimodal table benchmark that aligns the same table content across multiple structural formats and rendered images, with question category and difficulty tags. This design enables systematic evaluation of representation effects while holding table content fixed. We evaluate LLMs and VLMs across three tasks: Question Answering (QA), Structural Understanding Capability (SUC), and Structure Reconstruction (SR). Our results show that representation choice substantially affects table understanding. Models generally perform better with structured text than with rendered images, but the size of this gap depends on the task, model, and format. HTML is often the most robust text format, while row-sensitive structural tasks and syntactically usable LaTeX reconstruction remain challenging. These findings show that table representation is a key factor in reliable table evaluation.

Tables in real-world documents, including scientific papers, financial reports, and statistical summaries, frequently use merged cells, multi-level headers, and sectioned layouts. Yet the lightweight formats LLMs handle best (Markdown, CSV) cannot express these structures, while expressive formats (HTML, LaTeX) impose excessive token cost and parsing complexity. To enable systematic analysis of this trade-off, we introduce a taxonomy decomposing table structure into six atomic features (F1-F6) and corresponding complexity levels (L1-L6), and construct STB (Synthetic Table Benchmark), a controlled benchmark with 1,089 tables systematically distributed across complexity levels. Using this framework, we propose LTEM (LLM-friendly Table-Enhanced Markdown), a formally specified, minimal extension of Markdown that explicitly encodes spans and hierarchical headers. Experiments across five state-of-the-art LLMs show that LTEM achieves accuracy comparable to HTML, offers a favorable accuracy-token trade-off relative to HTML and LaTeX, and produces substantially fewer invalid responses than LaTeX; for table generation, LTEM is comparable to MultiMarkdown though HTML is best. We release our taxonomy, benchmark, and format specification to support future research on LLM-table interaction.

Structured tables are essential for conveying high-density information in professional domains such as finance, healthcare, and scientific research. Despite the progress in Multimodal Large Language Models (MLLMs), reasoning performance remains limited for complex tables with hierarchical layouts. In this paper, we identify a critical Perception Bottleneck through quantitative analysis. We find that as task complexity scales, the number of involved discrete visual regions increases disproportionately. This processing density leads to an internal "Perceptual Overload," where MLLMs struggle to maintain accurate spatial attention during implicit generation. To address this bottleneck, we introduce TableVision, a large-scale, trajectory-aware benchmark designed for spatially grounded reasoning. TableVision stratifies tabular tasks into three cognitive levels (Perception, Reasoning, and Analysis) across 13 sub-categories. By utilizing a rendering-based deterministic grounding pipeline, the dataset explicitly couples multi-step logical deductions with pixel-perfect spatial ground truths, comprising 6,799 high-fidelity reasoning trajectories. Our empirical results, supported by diagnostic probing, demonstrate that explicit spatial constraints significantly recover the reasoning potential of MLLMs. Furthermore, our two-stage decoupled framework achieves a robust 12.3% overall accuracy improvement on the test set. TableVision provides a rigorous testbed and a fresh perspective on the synergy between perception and logic in document understanding.