cs.LGApr 10, 2026

Below-ground Fungal Biodiversity Can be Monitored Using Self-Supervised Learning Satellite Features

Authors: Robin Young, Michael E. Van Nuland, E. Toby Kiers, Tomáš Větrovský, Petr Kohout, Petr Baldrian, Srinivasan Keshav

Organizations: Department of Computer Science and Technology, University of Cambridge, Cambridge, Cambridgeshire, UK. · Society for the Protection of Underground Networks, Dover, DE, US. · Amsterdam Institute for Life and Environment (A-LIFE), Section Ecology & Evolution, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. · Institute of Microbiology, Czech Academy of Sciences, Videnska 1083, Prague, 14200, Czech Republic. · 

Abstract

Mycorrhizal fungi are vital to terrestrial ecosystem functioning. Yet monitoring their biodiversity at landscape scales is often unfeasible due to time and cost constraints. Current predictions suggest that 90% of mycorrhizal diversity hotspots remain unprotected, opening questions of how to broadly and effectively map underground fungal communities. We show that self-supervised learning (SSL) applied to satellite imagery can predict below-ground ectomycorrhizal fungal richness across diverse environments. Our models explain over half the variance in species richness across ~12,000 field samples spanning Europe and Asia. SSL-derived features are the most informative tested predictor group, and outperform each of the established climate, soil, and land cover baselines. We achieve a 10,000-fold increase in spatial resolution over existing techniques, moving from 1km landscape averages to 10m habitat-scale observations. As satellite observations are dynamic rather than static, this enables temporal monitoring of below-ground biodiversity at landscape scales for the first time. We apply this approach across two UK National Park woodlands, where ancient forests are predicted to have high but declining ectomycorrhizal diversity, marking key areas for further field verification. These results establish SSL satellite features as a scalable tool for extending sparse field observations to continuous, high-resolution biodiversity maps for monitoring the invisible half of terrestrial ecosystems.

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