Critical-CoT: A Robust Defense Framework against Reasoning-Level Backdoor Attacks in Large Language Models

Large language models (LLMs) are vulnerable to backdoor attacks, where hidden triggers induce malicious outputs. Existing defenses generally fall into inference-time detection or training-time mitigation, but face two key limitations. First, they focus on fine-tuning-based backdoors (e.g., PEFT modules) and fail to address insidious model-editing attacks that bypass training pipelines. Second, they target simple classification settings and do not naturally extend to open-ended LLM generation and do not naturally extend to the open-ended generation characteristics of LLMs. Consequently, these methods focus on surface-level behavioral patterns while neglecting the deeper representational causes of malicious activations. This lack of mechanistic understanding forces defenses to depend on empirical heuristics, limiting their robustness, generality, and practical applicability in real-world LLM deployment. To bridge this gap, we introduce DeCNIP (Defense with Critical Neuron Isolation Pruning), which leverages representational analysis to identify and neutralize backdoors in a unified pipeline. Specifically, DeCNIP identifies trigger-like behaviors by optimizing a cross-entropy loss between harmful prompts with candidate tokens and benign inputs. This representational discovery exposes latent threats by uncovering mechanisms through which triggers hijack model weights. It then isolates Backdoor Critical Neurons (BCNs) and prunes them selectively to remove malicious influence while preserving model utility. Extensive evaluations on six open-source LLMs and two benchmark datasets demonstrate that DeCNIP achieves over 95% relative reduction in Attack Success Rate (ASR), outperforming seven state-of-the-art defenses with only 0.1% neuron intervention. Moreover, it maintains 97% of the model's performance on normal benchmarks, demonstrating its efficacy, robustness, and scalability.

Safety alignment in Large Language Models (LLMs) remains vulnerable to backdoor attacks. Existing LLM backdoors are almost all input-centric: activation depends on explicit trigger patterns in the user input, so modern guardrails are built to sanitize the input space. We challenge this assumption with a novel answer-side backdoor for multi-turn dialogue. Instead of inserting the trigger into the input, the adversary uses a benign first-turn prompt to naturally induce the model to generate a specific, seemingly innocuous word. Once merged into the dialogue history, this self-generated word becomes the trigger. When a later harmful query arrives, the model detects its own trigger and bypasses its safety refusal, while the user input stays perfectly clean. Across four LLMs, our attack reaches near-perfect Attack Success Rates, approaching 100% at only a 5% poisoning rate, while preserving general utility and clean-input safety, and it evades mainstream input-centric defenses. Representation-level analysis shows that the self-generated trigger consistently suppresses the model's refusal signal, exposing a critical blind spot in current LLM defenses.

Backdoor attacks in large language models (LLMs) are often treated as isolated trigger-response failures, motivating defenses tailored to specific triggers or behaviors. We show this view is incomplete. Across diverse backdoor behaviors, we identify a shared latent mechanism that can be detected, causally controlled, and suppressed. Using sparse autoencoders (SAEs) on residual-stream activations, we find a small set of latent features consistently activated across jailbreaking, refusal manipulation, password-locking, bias induction, sentiment misclassification, and country-conditioned harmful advice. These features generalize across Qwen3, Gemma3, and Llama3.1 models from 4B to 32B parameters, and across both fine-tuning and weight-editing attacks. Through bidirectional activation steering, we show these features are causal: suppressing them reduces attack success, while amplifying them induces target behaviors on clean prompts. We further train lightweight SAE-feature classifiers that generalize zero-shot to unseen backdoors and outperform residual-stream and weight-diffing baselines. Finally, we introduce Concept Ablation Fine-Tuning (CAFT), which suppresses backdoor formation by ablating the shared latent subspace during training. Together, our results suggest that many backdoors rely on a transferable latent mechanism, enabling unified detection and mitigation.