Correcting Suppressed Log-Probabilities in Language Models with Post-Transformer Adapters

Many organizations aim to adapt language models for internal use, both to improve performance on domain-specific tasks and to address privacy concerns around sensitive data. However, such adaptation remains non-trivial: it often requires operationally challenging fine-tuning of open-source models or ad hoc prompt optimization. We study a minimal alternative based on a simple API-level control: allowing users to bias the model's logits with a user-defined vector. We develop a black-box method for learning a single context-independent logit-bias vector, added at every decoding step, without modifying model weights or requiring gradients. Starting from a KL-regularized reinforcement learning (RL) objective, we characterize when such a fixed logit-bias vector can approximate the optimal prefix-dependent correction and derive a closed-form inverse-propensity estimator from rollouts, rewards, and token probabilities. Empirically, this simple decoding-time intervention improves over base models on mathematical and reasoning benchmarks while using far fewer trainable parameters than conventional fine-tuning. Our results suggest that learned logit bias is a lightweight mechanism for adapting language models under minimal access requirements.

We study a practical question: can a small correction module fix errors in a frozen language model's outputs without degrading its base capabilities? We propose CRN v2, a lightweight logit-level correction module (~34M trainable parameters, 0.73% of the 4.65B text module) that sits atop a fully frozen Gemma 4 E2B model. The base model is never updated; only the correction module learns, via supervised fine-tuning followed by reference-free DPO on 83,400 error-correction pairs. On a 60-question domain exam (CEHRI: Certified Human-Robot Intelligence, covering facts, arithmetic, and implicit-goal reasoning), CRN v2 corrects 53.3% of base-model errors (reworded variant: 43.3%) while showing no degradation on tested capability benchmarks (MMLU/BoolQ N=200; car-wash N=8). A LoRA baseline at the matched CRN v1 budget (6.6M params, rank 19) achieves 83.3% correction but suffers 30-75% capability loss on the same benchmarks -- the correction-capability tradeoff. An ablation shows that the KL preservation term (lambda=0.1) is critical: lowering it to 0.01 degrades correction to 35.0%. A hidden-state injection variant at earlier layers (1.6M params, SFT-only) reaches 50.0%/55.8% but does not exceed logit correction; shallower injection (layer 4) drops to 30.0%/28.3%; multi-depth logit correction (~35M) reaches only 40%; and longer training (5,000 SFT + 2,000 DPO) stays at 53.3% -- none of the alternative configurations we tested exceeded the rank-128 logit result, consistent with a best-achieved result of ~53% rather than a floor. This is a study of a design principle (frozen base + logit correction + KL anchoring), not a claim of architectural novelty. All code, main-result weights, and evaluation scripts are released (deep variant as code only -- no trained deep checkpoints).

While reasoning models are increasingly ubiquitous, the effects of reasoning training on a model's internal mechanisms remain poorly understood. In this work, we introduce transcoder adapters, a technique for learning an interpretable approximation of the difference in MLP computation before and after fine-tuning. We apply transcoder adapters to characterize the differences between Qwen2.5-Math-7B and its reasoning-distilled variant, DeepSeek-R1-Distill-Qwen-7B. Learned adapters are faithful to the target model's internal computation and next-token predictions. When evaluated on reasoning benchmarks, adapters match the reasoning model's response lengths and typically recover 50-90% of the accuracy gains from reasoning fine-tuning. Adapter features are sparsely activating and interpretable. When examining adapter features, we find that only ~8% have activating examples directly related to reasoning behaviors. We deeply study one such behavior -- the production of hesitation tokens (e.g., "wait"). Using attribution graphs, we trace hesitation to only ~2.4% of adapter features (5.6k total) performing one of two functions. These features are necessary and sufficient for producing hesitation tokens; removing them reduces response length, often without affecting accuracy. Overall, our results provide insight into reasoning training and suggest transcoder adapters may be useful for studying fine-tuning more broadly.