From Craft to Kernel: A Governance-First Execution Architecture and Semantic ISA for Agentic Computers

Large language model (LLM) agents are vulnerable to prompt-injection attacks that propagate through multi-step workflows, tool interactions, and persistent context, making input-output filtering alone insufficient for reliable protection. This paper presents SafeAgent, a runtime security architecture that treats agent safety as a stateful decision problem over evolving interaction trajectories. The proposed design separates execution governance from semantic risk reasoning through two coordinated components: a runtime controller that mediates actions around the agent loop and a context-aware decision core that operates over persistent session state. The core is formalized as a context-aware advanced machine intelligence and instantiated through operators for risk encoding, utility-cost evaluation, consequence modeling, policy arbitration, and state synchronization. Experiments on Agent Security Bench (ASB) and InjecAgent show that SafeAgent consistently improves robustness over baseline and text-level guardrail methods while maintaining competitive benign-task performance. Ablation studies further show that recovery confidence and policy weighting determine distinct safety-utility operating points.

AI agents are granted access to tools, APIs, and other infrastructure, making them active principals in those systems. The dominant approach places controls inside the agent's own runtime: system prompts, output filters, and guardrail libraries. Any control in the agent's address space is reachable by inputs that influence it; this generalizes to any AI system with sufficient reach into its own runtime, a class we term escapable AI systems. We identify four properties that an authorization mechanism must satisfy for architectural control rather than for cooperative requests: process separation, pre-action enforcement on a structurally only path, fail-closed at both the request and system levels, and externalized signed evidence verifiable outside the controlled system's trust boundary. We position this layer as execution-time AI alignment, complementing training-time alignment (RLHF, Constitutional AI) and inference-time alignment. We present the Unfireable Safety Kernel, a Rust reference implementation realizing all four. Its fail-closed invariant is machine-checked at two levels: an SMT theorem (Z3) and an exhaustive bounded-model-checking proof of the production decision function (Kani, 4/4 harnesses). A Python-to-Rust migration was gated on byte-equivalence (1000/1000 fixtures; 17/17 adversarial classes). We evaluate the kernel governing a live, escapable AI system, a deterministic, self-improving world model, against an escape-seeking adversary driving its real self-modification seam: across 1,000 self-modifications, all 704 attempts on the safety-critical core are refused, with no escape; a further 300, under the operator kill switch, are also refused. A separate campaign of 6,240 authorization round-trips had no successful bypass. Against 3 contemporary systems claiming the agent control plane, the agent invokes control; here, it lacks that choice.

Large language model (LLM) agents increasingly issue API calls that mutate real systems, yet many current architectures pass stochastic model outputs directly to execution layers. We argue that this coupling creates a safety risk because model correctness, context awareness, and alignment cannot be assumed at execution time. We introduce Sovereign Agentic Loops (SAL), a control-plane architecture in which models emit structured intents with justifications, and the control plane validates those intents against true system state and policy before execution. SAL combines an obfuscation membrane, which limits model access to identity-sensitive state, with a cryptographically linked Evidence Chain for auditability and replay. We formalize SAL and show that, under the stated assumptions, it provides policy-bounded execution, identity isolation, and deterministic replay. In an OpenKedge prototype for cloud infrastructure, SAL blocks 93% of unsafe intents at the policy layer, rejects the remaining 7% via consistency checks, prevents unsafe executions in our benchmark, and adds 12.4 ms median latency.