Experiments or Outcomes? Probing Scientific Feasibility in Large Language Models
Authors: Seyedali Mohammadi, Manas Gaur, Francis Ferraro
Organizations: University of Maryland, Baltimore County, MD, USA
Abstract
Scientific feasibility assessment asks whether a claim is consistent with established knowledge and whether experimental evidence could support or refute it. We frame feasibility assessment as a diagnostic reasoning task in which, given a hypothesis, a model predicts feasible or infeasible and justifies its decision. We evaluate large language models (LLMs) under controlled knowledge conditions (hypothesis-only, with experiments, with outcomes, or both) and probe robustness by progressively removing portions of the experimental and/or outcome context. Across multiple LLMs and two datasets, providing outcome evidence is generally more reliable than providing experiment descriptions. Outcomes tend to improve accuracy beyond what internal knowledge alone provides, whereas experimental text can be brittle and may degrade performance when the context is incomplete. These findings clarify when experimental evidence benefits LLM-based feasibility assessment and when it introduces fragility.
Large language model (LLM)-based systems are increasingly deployed to conduct scientific research autonomously, yet whether their reasoning adheres to the epistemic norms that make scientific inquiry self-correcting is poorly understood. Here, we evaluate LLM-based scientific agents across eight domains, spanning workflow execution to hypothesis-driven inquiry, through more than 25,000 agent runs and two complementary lenses: (i) a systematic performance analysis that decomposes the contributions of the base model and the agent scaffold, and (ii) a behavioral analysis of the epistemological structure of agent reasoning. We observe that the base model is the primary determinant of both performance and behavior, accounting for 41.4% of explained variance versus 1.5% for the scaffold. Across all configurations, evidence is ignored in 68% of traces, refutation-driven belief revision occurs in 26%, and convergent multi-test evidence is rare. The same reasoning pattern appears whether the agent executes a computational workflow or conducts hypothesis-driven inquiry. They persist even when agents receive near-complete successful reasoning trajectories as context, and the resulting unreliability compounds across repeated trials in epistemically demanding domains. Thus, current LLM-based agents execute scientific workflows but do not exhibit the epistemic patterns that characterize scientific reasoning. Outcome-based evaluation cannot detect these failures, and scaffold engineering alone cannot repair them. Until reasoning itself becomes a training target, the scientific knowledge produced by such agents cannot be justified by the process that generated it.
Large language models are being proposed as agents in scientific workflows, in domains where no downstream verifier exists. Such deployment assumes the model can distinguish reliable scientific literature from unreliable literature, a capability that has not yet been directly measured. Existing benchmarks evaluate factuality on questions with known answers; the failure mode we target here is different. We introduce a probe corpus of 42 retracted, fraudulent, and pseudoscientific papers, paired with a methodology for eliciting and scoring single-shot model engagement with each paper's framing. Each probe pairs a preamble extracted near-verbatim from the target paper with a scientifically plausible study-design request. The probes span five claim types: fabricated observation, pseudophysical mechanism, magical premise, legitimization bridge, and cargo-cult experiment. Two complementary scores measure whether a model rejects the flawed premise outright (IFR-a) and whether it recognizes the unreliability while still engaging (IFR-i). A depth score, the Engagement Depth Index (EDI), quantifies reproduction of paper- or field-specific withheld details. Across 30 models and 10 repeated runs, aggregate IFR-a is 0.93 ± 0.004 and aggregate IFR-i is 0.809 ± 0.009. Models engaged with untenable premises in 95% of all non-empty responses. Every evaluated model fails more than 71% of agentic probes, and 22 of 30 models fail more than 90% of the time. Rejections are concentrated on a small number of high-notoriety topics and specific probes, and disappear under matched-structure controls. These results are consistent with topic-keyed safety behavior rather than robust epistemic competence, and indicate an urgent need for guardrail infrastructure for scientific deployment of language models.
We present SFBench, a benchmark dataset for evaluating systems that assess the feasibility of scientific claims. SFBench includes 197 claims in materials science, each annotated with a ground-truth feasibility score on a five-point scale along with an explanation of that assessment. The collection differs from previous collections in several important ways: 1) it defines a complex task that requires reasoning over claims of varying scientific feasibility; 2) its claims are not extracted from existing scientific publications but are created de novo, greatly reducing the chances that LLMs have trained on them; 3) claims and ground truth are established by subject matter experts, not by artificial intelligence; and 4) unlike many benchmarks that ask about question/answer pairs, provide multiple choice answers, or ask questions requiring short, fixed answers, SFBench explanations are completely open-ended. We describe the benchmark design, data creation process, and evaluation metrics, and we report baseline results using recent GPT models.