Self-Supervised Learning of Plant Image Representations

This paper describes DS@GT ARC's third-place solution to the PlantCLEF 2026 challenge on multi-species plant identification in vegetation quadrat images, where systems must predict every species present in high-resolution (~3000 x 3000 pixel) plot photographs while training only on single-label images of individual plants. The pipeline is built around a fine-tuned DINOv2 ViT-L/14 classifier applied over a multi-scale tile decomposition of each quadrat, with per-tile predictions blended with a FAISS kNN retriever and post-processed by source-aware temporal fusion across repeated plot visits, a habitat-fit demotion that injects geographic and altitude priors from the training data, and a South-Western Europe geographic mask. Habitat-fit demotion and multi-scale aggregation are the largest individual contributors in the ablations. Two complementary training-centric directions, a cross-region transformer with noisy-student distillation on the LUCAS dataset and a label-as-query transformer decoder over synthetic CLS-domain pseudo-quadrats, yielded null results. An inference-time augmentation with instance-aware segmentation crops also did not improve performance. The selected submission reaches a private-leaderboard macro-F1 of 0.43902 (third place; public 0.51096); an unselected configuration of the same pipeline scored above 0.45 on the private set. Code: https://github.com/dsgt-arc/plantclef-2026.

Recent advances in large-scale visual representation learning have significantly improved performance in plant species and plant disease recognition tasks. However, state-of-the-art models, often based on high-capacity vision transformers or multimodal foundation models, remain computationally expensive and difficult to deploy in resource-constrained environments such as mobile or edge devices. This limitation hinders the scalability of automated biodiversity monitoring and precision agriculture systems, where efficiency is as critical as accuracy. In this work, we investigate knowledge distillation as an effective approach to transfer the representational capacity of large pretrained models into smaller, more efficient architectures. We focus on plant species and disease recognition, and conduct an extensive empirical study on two challenging benchmarks: Pl@ntNet300K-v2 and Deep-Plant-Disease. We evaluate four representative architectures, including two ConvNeXt models and two vision transformers, under multiple training regimes: from-scratch training and pretrained initialization, each with and without distillation. In total, we train and evaluate 70 models. Our results show that knowledge distillation consistently improves performance across tasks and architectures. Distilled models are able to match the performance of significantly larger models while maintaining substantially lower computational cost. These findings demonstrate the potential of knowledge distillation techniques to enable efficient and scalable deployment of plant recognition systems in real-world environmental applications.

Self-supervision is a powerful technique for learning visual representations from unlabeled data. Existing techniques primarily adopt a two-stage approach for self-supervised learning (SSL): a pretraining stage on unlabeled data followed by a finetuning stage on labeled data. While this pipeline has demonstrated extreme effectiveness, the interaction between self-supervised and supervised learning objectives remains insufficiently understood. In this work, we systematically investigate whether jointly optimizing the self-supervised and supervised objectives during training provides a better alternative. We compare two training paradigms: (1) the aforementioned pretraining followed by finetuning (PFT) and (2) joint training (JT), where self-supervised and supervised losses are optimized simultaneously in the same network. Across eight representative SSL methods and diverse computer vision tasks on natural, medical, crisis response, and remote sensing data, we evaluate performance under varying percentages of labeled data. Our results reveal that the relative effectiveness of PFT and JT depends strongly on the task at hand, the availability of labeled data, and the complexity of the domain. We find that JT consistently improves data and training efficiency while being robust in low-label settings, while PFT is more reliable in more specialized domains. We further analyze representation quality, robustness, and cross-domain generalization, providing new insights into how self-supervised and supervised objectives interact during optimization. We establish a comprehensive empirical benchmark for hybrid SSL-based semi-supervised learning and offer practical guidance for selecting appropriate training strategies across diverse vision applications.