Binomial flows: Denoising and flow matching for discrete ordinal data

Discrete diffusion models are a powerful class of generative models with strong performance across many domains. For efficiency, however, discrete diffusion typically parameterizes the generative (reverse) process with factorized distributions, which makes it difficult for the model to learn the target process in a small number of steps and necessitates a long, computationally expensive sampling procedure. To reduce the gap between the target and model distributions and enable few-step generation, we propose Forward-Learned Discrete Diffusion (FLDD), which introduces discrete diffusion with a learnable forward (noising) process. Rather than fixing a Markovian forward chain, we adopt a non-Markovian formulation with learnable marginal and posterior distributions. This allows the generative process to remain factorized while matching the target defined by the noising process. We train all parameters end-to-end under the standard variational objective. Experiments on various benchmarks show that, for a given number of sampling steps, our approach produces a higher quality samples than conventional discrete diffusion models using the same reverse parameterization.

We survey continuous-time generative modeling methods based on transporting a simple reference distribution to a data distribution via stochastic or deterministic dynamics. We present a unified framework in which diffusion models, score-based generative models, and flow matching are instances of learning a time-dependent vector field that induces a family of marginals $(ρ_t)_{t \in [0,1]}$ governed by continuity and Fokker-Planck equations. Such a unified theory is timely because these methods are converging methodologically, yet fragmented notation and competing derivations continue to obscure their shared structure and the practical tradeoffs governing sampling, stability, and computation. Within this framework, we (i) derive reverse-time sampling for diffusion and score-based models as controlled stochastic dynamics, (ii) show that the probability flow ODE yields identical marginals and connects diffusion to likelihood-based normalizing flows, and (iii) interpret flow matching as direct regression of the velocity field under a chosen interpolation, clarifying when it coincides with or differs from score-based training. We compare objectives, sampling schemes, and discretization errors under unified notation, discuss connections to Schrodinger bridges and entropic optimal transport, and summarize theoretical guarantees and open problems on approximation, stability, and scalability.

High-dimensional count data arise in applications such as single-cell RNA sequencing and neural spike trains, where mapping between distributions across successive batches or time points form critical components of data analysis. The recent success of diffusion- and flow-based deep generative models for images, video, and text motivates extending these ideas to count-valued settings, but many existing methods either treat each count as a categorical state or transform counts into a continuous space, neither of which is natural or efficient when the count range is large. We propose count-FM, a flow-matching framework for count data based on a continuous-time birth-death process with local unit jumps. Count-FM learns marginal transitions efficiently in count space through simulation-free training of conditional transition rates, allowing transport between arbitrary count-distributed source and target populations. In simulation, count-FM achieves better sample quality than representative baselines while using substantially fewer parameters. We further apply count-FM to scRNA-seq and neural spike-train data for unconditional generation, transport, and conditional generation. Across these tasks, count-FM yields improved sample quality, greater modeling efficiency, and interpretable transport paths.