Activation Differences Reveal Backdoors: A Comparison of SAE Architectures

Backdoor attacks in large language models (LLMs) are often treated as isolated trigger-response failures, motivating defenses tailored to specific triggers or behaviors. We show this view is incomplete. Across diverse backdoor behaviors, we identify a shared latent mechanism that can be detected, causally controlled, and suppressed. Using sparse autoencoders (SAEs) on residual-stream activations, we find a small set of latent features consistently activated across jailbreaking, refusal manipulation, password-locking, bias induction, sentiment misclassification, and country-conditioned harmful advice. These features generalize across Qwen3, Gemma3, and Llama3.1 models from 4B to 32B parameters, and across both fine-tuning and weight-editing attacks. Through bidirectional activation steering, we show these features are causal: suppressing them reduces attack success, while amplifying them induces target behaviors on clean prompts. We further train lightweight SAE-feature classifiers that generalize zero-shot to unseen backdoors and outperform residual-stream and weight-diffing baselines. Finally, we introduce Concept Ablation Fine-Tuning (CAFT), which suppresses backdoor formation by ablating the shared latent subspace during training. Together, our results suggest that many backdoors rely on a transferable latent mechanism, enabling unified detection and mitigation.

Even though backdoors in LLMs have been a growing concern, their inner workings are still under heavy scrutiny. Trigger-based backdoors are easy to define behaviorally, a rare input that makes the model switch to a chosen response pattern, but the mechanism between triggers and their responses is less clear. We study this mechanism in a controlled, harmless language-switching setting, where fixed trigger sequences make 1B and 8B language models continue English prompts in French or German. For this, we train sparse autoencoders (SAEs) across layers and transformer components, then compare triggered prompts with translation and pretraining controls to identify trigger-relevant feature directions. We show how SAE features separate triggered prompts from controls with near-perfect F1, but features that detect the trigger do not necessarily control the behavior. In intervention tests, attention and MLP features often fire reliably on triggered prompts, making them good detectors, but ablating them rarely suppresses the language switch and activating them rarely induces it. In contrast, residual-stream features can suppress triggered generation when ablated, and some selected features can induce target-language continuations without the trigger. In short, these token-trigger mechanisms decompose into distinct SAE feature directions, with separate features for trigger detection, residual-stream propagation, and later language tracking. This role-level decomposition is the part most likely to transfer to other trigger-based backdoors, even when the payload, layers, or circuit locations differ.

Large language models are often fine-tuned, shared, or downloaded from third parties, so a deployed model may carry a hidden backdoor that behaves normally on benign inputs but switches to attacker-controlled behavior when a secret trigger appears. While backdoors can be audited before deployment, runtime monitoring remains important for models that are frequently updated. The challenge is that LLM serving is latency-sensitive: existing inference-time detectors either rely on assumptions about the trigger form, which can fail on stealthy attacks, or require extra model computation, such as input perturbations or an additional generation pass. We introduce SpecGuard, an inference-time backdoor detector that repurposes speculative decoding at zero added model-computation cost. Speculative decoding speeds up inference by using a small draft model to propose tokens and a target model to verify them. We observe that this verification process already exposes a useful signal: when a backdoor is triggered, the target model shifts toward the attacker's behavior, while a clean draft model does not predict this shift, causing the draft-token acceptance rate to change. We formalize when this signal appears and show that an attacker who suppresses it must also weaken the backdoor. Across diverse backdoor types and model families, SpecGuard reliably detects triggered behavior, including stealthy cases where input-level filters are blind, while avoiding the extra generation cost of existing runtime detectors. Speculative decoding therefore doubles as a free, always-on signal for detecting backdoored LLM behavior.