Private Vertical Federated Inference for Time-Series

Cooperative inference across independently deployed machine learning models is increasingly desirable in distributed environments, as there is a growing need to leverage multiple models while keeping their data and model parameters private. However, existing cooperative frameworks typically rely on sharing input data, model parameters, or a common encoder, which limits their applicability in privacy-sensitive or cross-organizational settings. To address this challenge, we propose Consensus Embedding-based Federated Inference (CE-FI), a framework that enables pretrained models to cooperate at inference time without sharing model parameters or raw inputs and without assuming a common encoder. CE-FI introduces two components: a Consensus Embedding (CE) layer that maps heterogeneous intermediate representations into a common embedding space, and a Cooperative Output (CO) layer that produces predictions from these embeddings. Both layers are trained using shared unlabeled data only, so the cooperative stage does not require additional labeled data. Experiments on image classification benchmarks -- CIFAR-10 and CIFAR-100 -- under diverse non-IID conditions show that CE-FI consistently outperforms solo inference and performs comparably to conventional methods that require stronger sharing assumptions. Additional evaluations on text and time-series tasks indicate applicability beyond image classification, although performance depends on the ensemble strategy. Further analysis identifies representation alignment as the primary bottleneck.

Privacy-preserving machine learning (PPML) has become increasingly important in applications where sensitive data must remain confidential. Homomorphic Encryption (HE) enables computation directly on encrypted data, allowing neural network inference without revealing raw inputs. While prior works have largely focused on inference over a single encrypted image, batch processing of encrypted inputs lags behind, despite being critical for high-throughput inference scenarios and training-oriented workloads. In this work, we address this gap by developing optimized algorithms for batched HE-friendly neural networks. We also introduced a pipeline architecture designed to maximize resource efficiency for different batch size execution. We implemented these algorithms and evaluated our work using HE-friendly ResNet-20 and ResNet-34 models on encrypted CIFAR-10 and CIFAR-100 datasets, respectively. For ResNet-20, our approach achieves an amortized inference time of 8.86 seconds per image when processing a batch of 512 encrypted images, with a peak memory usage of 98.96 GB. These results represent a 1.78x runtime improvement and a 3.74x reduction in memory usage compared to the state-of-the-art design. For the deeper ResNet-34 model, we achieve an amortized inference time of 28.14 on a batch of 256 encrypted images using 246.78GB of RAM

Private inference protects both user inputs and server models during neural network inference, but existing solutions remain too slow for practical deployment. This motivates recent efforts to run a public encoder, such as a pretrained backbone, outside the protection boundary and evaluate only a small private predictor cryptographically. While appealing for efficiency, this design is not inherently secure: naively offloading a public encoder may create a feature-space shortcut: an extraction adversary may learn the remaining private predictor's feature-to-output mapping more easily than the original model's input-to-output behavior. We present Gecko, designed to limit this additional risk while retaining a compact encrypted predictor. We leverage a frozen backbone that contributes hierarchical features, fixed Fastfood projections that compress them, and private feature gating that prepares them for prediction. We formalize ideal independence and information-preservation conditions as design guidance, then separately evaluate component-reuse extraction attacks. Across image and audio tasks, Gecko achieves 0.4-2.2 second inference with at most 10.8 MB communication and accuracy comparable to transfer-learning baselines. Under the evaluated attacks, reusing the offloaded public encoder provides no significant advantage to model-extraction adversaries. Source code and a demo are available at https://github.com/CassiniHuy/gecko-infer.