SAGE: Scalable Agentic Grounded Evaluation for Crop Disease Diagnosis

Existing plant-disease datasets target classification and detection, leaving vision-language models unable to support interactive, reasoning-based diagnosis. To address this, we present PlantExpertVQA, a large-scale visual question answering (VQA) dataset designed to advance vision-language models for agricultural decision-making. It is compiled from 45 open-source datasets, including the widely used PlantVillage corpus, and comprises 765,186 high-quality question-answer (QA) pairs grounded over 150,841 images spanning 38 crop species and 89 disease conditions. Questions are organized into 3 levels of cognitive complexity and 9 distinct categories. Each was phrased following expert guidance and generated via an automated two-stage pipeline: template-based QA synthesis from image metadata, followed by multi-stage linguistic re-engineering. The dataset was iteratively reviewed by domain experts for scientific accuracy and relevance. We find that current frontier vision-language models, including recent open-source instruction-tuned multimodal LLMs, perform poorly on PlantExpertVQA. However, parameter-efficient fine-tuning of a compact 2B-parameter model on a small fraction of the dataset yields substantial improvements across all question categories, demonstrating its effectiveness for domain adaptation.

Vision-language models (VLMs) show promise for agricultural classification, but zero-shot performance on disease, pest, damage, quality, and species identification remains poor, and it is unclear whether this reflects weak visual features or a failure to connect them to domain knowledge. We build a benchmark of 116 datasets, 834 classes, and 8,324 images spanning these tasks to isolate where the gap arises. Linear probing shows VLM vision encoders already encode agricultural features nearly as separable as a self-supervised DINOv3 baseline, ruling out weak visual representations as the primary bottleneck. Conditioning each model on an oracle reference description (an upper bound on its parametric knowledge) closes most of the gap left by an unaided lower bound, showing VLMs already know more about agriculture than they show. To close this gap without an oracle description at inference time, we structure test-time reasoning around a fixed, per-task diagnostic rubric: the model generates $K$ candidate responses and a Probabilistic Pivot Tournament (PPT) verifier, scored pairwise against the rubric, selects the best one. This nearly doubles judged F1 over the lower bound and matches or exceeds the upper bound on several tasks, notably pushing Gemma 4 E4B-it's disease F1 to 0.71, above its own upper bound of 0.60. However, the verifier's letter-scale confidence score has the opposite of its intended effect: filtering to its most confident predictions does not improve accuracy and correlates negatively with correctness across every model and pool size tested, so the score cannot serve as a measure of predictive uncertainty, and most of the observed gain likely comes from rubric-grounded generation rather than pairwise verification.

Crop disease diagnosis from field photographs faces two recurring problems: models that score well on benchmarks frequently hallucinate species names, and when predictions are correct, the reasoning behind them is typically inaccessible to the practitioner. This paper describes Agri-CPJ (Caption-Prompt-Judge), a training-free few-shot framework in which a large vision-language model first generates a structured morphological caption, iteratively refined through multi-dimensional quality gating, before any diagnostic question is answered. Two candidate responses are then generated from complementary viewpoints, and an LLM judge selects the stronger one based on domain-specific criteria. Caption refinement is the component with the largest individual impact: ablations confirm that skipping it consistently degrades downstream accuracy across both models tested. On CDDMBench, pairing GPT-5-Nano with GPT-5-mini-generated captions yields \textbf{+22.7} pp in disease classification and \textbf{+19.5} points in QA score over no-caption baselines. Evaluated without modification on AgMMU-MCQs, GPT-5-Nano reached 77.84% and Qwen-VL-Chat reached 64.54%, placing them at or above most open-source models of comparable scale despite the format shift from open-ended to multiple-choice. The structured caption and judge rationale together constitute a readable audit trail: a practitioner who disagrees with a diagnosis can identify the specific caption observation that was incorrect. Code and data are publicly available https://github.com/CPJ-Agricultural/CPJ-Agricultural-Diagnosis