From subcellular structures to entire organisms, many natural systems generate complex organisation through self-organisation: local interactions that collectively give rise to global structure without any blueprint of the outcome. Yet a significant portion of the information driving such processes is not produced by self-organisation itself, instead, it is often offloaded to initial conditions of the system. Biological development is a prime example, where maternal pre-patterns encode positional and symmetry-breaking information that scaffolds the self-organising process. From maternal morphogen gradients in early embryogenesis to tissue-level morphogenetic pre-patterns guiding organ formation, this transfer of information to initial conditions, analogous to a memory-compute trade-off in computational systems, is a fundamental part of developmental processes. In this work, we study this offloading phenomenon by introducing a model that jointly learns both the self-organisation rules and the pre-patterns, allowing their interplay to be varied and measured under controlled conditions: a Neural Cellular Automaton (NCA) paired with a learned coordinate-based pattern generator (SIREN), both trained simultaneously to generate a set of patterns. We provide information-theoretic analyses of how information is distributed between pre-patterns and the self-organising process, and show that jointly learning both components yields improvements in robustness, encoding capacity, and symmetry breaking over purely self-organising alternatives. Our analysis further suggests that effective pre-patterns do not simply approximate their targets; rather, they bias the developmental dynamics in ways that facilitate convergence, pointing to a non-trivial relationship between the structure of initial conditions and the dynamics of self-organisation.
Self-organization is an emergent property of life, driven by the collective behavior of individual components acting on local information. Biological neurons, through local interactions transmitted through synapses, are able to learn efficiently and can adapt their connections over an organism's lifespan. Motivated by these desirable properties of adaptability and local interaction, neural cellular automata (NCA) models have been successful at learning morphogenesis solely through local update rules, demonstrating stability over many updates and robustness to perturbations. In this work, we introduce Meta Neural Cellular Automata (MetaNCA), a framework that learns local rules which self-organize the weights of artificial neural networks. A learned rule network iteratively updates the weights of a task network using only local interactions on the computation graph. We propose a novel Weight Transformer architecture for the local rule network, which uses linear attention to aggregate signals from neighboring weights and hidden states. Once trained, the rule network generates task networks of diverse architectures without backpropagation. We show that MetaNCA generates weights for feedforward MLPs, CNNs, and ResNets on MNIST and CIFAR-100, scaling to networks of 2 million parameters. We further show that MetaNCA generalizes to architectures not seen during meta-training, and that architectural diversity in the training phase strengthens this generalization.
Meet Barot, Daniel Berenberg, Sina Khajehabdollahi
This work simulates the developmental process of cortical neurogenesis, initiating from a single stem cell and governed by gene regulatory rules derived from mouse single-cell transcriptomic data. The developmental process spontaneously generates a heterogeneous population of 5,000 cells, yet yields only 85 mature neurons - merely 1.7% of the total population. These 85 neurons form a densely interconnected core of 200,400 synapses, corresponding to an average degree of 4,715 per neuron. At iteration zero, this minimal circuit performs at chance level on MNIST. However, after a single epoch of standard training, accuracy surges to over 90% - a gain exceeding 80 percentage points - with typical runs falling in the 89-94% range depending on developmental stochasticity. The identical circuit, without any architectural modification or data augmentation, achieves 40.53% on CIFAR-10 after one epoch. These findings demonstrate that developmental rules sculpt a domain-general topological substrate exceptionally amenable to rapid learning, suggesting that biological developmental processes inherently encode powerful structural priors for efficient computation.
Growing Neural Cellular Automata (GNCA) are capable of robust self-maintenance and self-repair, yet the internal dynamical mechanisms that support these capabilities remain poorly understood. Here, we investigate the role of internal fluctuations--temporal micro-variability of hidden channel states--in a trained GNCA model, challenging the assumption that such variability is merely residual stochastic noise. Through systematic analysis spanning update-rate sweeps, spatial correlation measurements, dimensionality reduction of collective state trajectories, localized damage experiments, transfer entropy vector field estimation, and partial information decomposition, we show that internal fluctuations are spatially structured, dynamically coupled to an attracting collective state, and associated with distributed small-magnitude updates that contribute to damage recovery. Damage induces a global deviation in latent state space followed by gradual re-convergence, and suppressing distributed small-magnitude updates associated with baseline fluctuation dynamics outside a permissive radius that encompasses the majority of the cells significantly impairs recovery. Transfer entropy analysis characterizes a spatially differentiated repair response: corrective inward flow near the damage site coexists with outward perturbation propagation at greater distances. Partial information decomposition further suggests a regime shift from synergy-dominant resting computation to redundancy-increased coordination during recovery. These findings indicate that GNCA self-repair emerges from high-dimensional nonlinear collective dynamics in which internal fluctuations serve as a functional component supporting information flow, coordination, and return toward an attracting recurrent state.