Tadpole: Autoencoders as Foundation Models for 3D PDEs with Online Learning

Pretrained partial differential equation (PDE) foundation models can generalize across different equations, but adapting them to unseen PDE systems typically requires dense solution data, which is often expensive or unavailable. To address this limitation, we propose an unsupervised PDE-based finetuning framework that eliminates the need for ground-truth solutions. We first pretrain a neighborhood attention Transformer on diverse time-dependent PDEs spanning varying spatial scales, yielding transferable representations across heterogeneous equations. In the adaptation stage, we construct a physics-based objective using the PDE residual and boundary conditions, and finetune the model on unseen equations via low-rank adaptation (LoRA). To address the uneven learning across physical quantities in standard LoRA, we introduce NSLoRA, a Newton-Schulz orthogonalized variant that rebalances adaptation. Our method achieves performance comparable to supervised LoRA finetuning without requiring any ground-truth solutions, while consistently outperforming competitive neural operator baselines and recent PDE foundation models across heterogeneous PDE benchmarks spanning multiple spatial dimensions.

Foundation models for time-dependent partial differential equations (PDEs) are trained on large and diverse collections of physical systems and can generalize effectively to new downstream tasks. After fine-tuning on only a few trajectories from a target domain, they can achieve strong accuracy in low-data regimes. However, these models are typically large and computationally intensive, limiting their usefulness as fast surrogates for numerical solvers. We propose Teacher Rollout Extension (TREX), a knowledge distillation framework that transfers the predictive capability of a pretrained foundation model into a compact and efficient student. Starting from a fine-tuned teacher, TREX augments limited downstream data by generating long synthetic trajectories through teacher rollouts, optionally with periodic noise injection. This procedure samples from the teacher-induced rollout distribution without requiring explicit knowledge of the initial-condition distribution, while exposing the student to long-horizon states and local recovery behavior around states encountered during autoregressive prediction. The student can further incorporate task-specific inductive biases, such as equivariance, that the teacher does not necessarily enforce. We evaluate TREX on multiple PDE benchmarks. The resulting students can match or surpass the teacher's accuracy while reducing the number of parameters by several orders of magnitude and achieving more than an order-of-magnitude speedup in inference.

Pre-training neural operators on diverse partial differential equation (PDE) datasets has emerged as a promising direction for building general-purpose surrogate models in scientific machine learning. However, the inherent complexity and structural diversity of PDE solution operators make multi-PDE pre-training fundamentally challenging. Existing methods mainly address this by increasing model capacity, while leaving the target solution operators unchanged. Inspired by classical numerical analysis, we instead propose to transform complex and diverse solution operators into simpler, better-aligned forms that are easier to model jointly. Since the optimal transformation varies across PDE types, it must be adaptive and input-dependent, allowing a single neural operator to approximate an entire family of operators. We instantiate this idea as AOT-POT (adaptive operator-transformation for pre-training operator transformer), which expands hidden representations into multiple parallel streams, adaptively aggregates and redistributes them before and after each sub-layer, and mixes streams through Sinkhorn-projected doubly stochastic matrices for stable training. These mechanisms together reshape diverse solution operators into a unified form that can be effectively modeled by a single architecture. Empirically, AOT-POT achieves state-of-the-art performance on 12 PDE benchmarks with only 3% additional parameters, reducing relative L2 error by up to 77.6% (40.9% on average). Fine-tuning AOT-POT further reduces L2 error by up to 92% on in-domain PDEs and 89% on out-of-domain PDEs (unseen types during pre-training), demonstrating that adaptive operator transformation is an effective and complementary direction for advancing PDE foundation models beyond simply scaling model capacity.