Fine-tuning language encoding models on slow fMRI improves prediction for fast ECoG

Intracranial electrocorticography (ECoG) offers high-signal-to-noise access to cortical activity for brain-computer interfaces, yet limited per-patient data has led most prior work to rely on small, subject-specific decoders that neglect information shared across patients. We investigate whether large pretrained scalp-EEG foundation models (EEG FMs) can be adapted to ECoG, enabling cross-patient learning and competitive decoding performance while calibrating to a held-out patient in 10-30 minutes on a single GPU. We introduce CORTEG, a cross-modality transfer framework that combines a pretrained EEG FM backbone, an electrode-aware KNNSoftFourier spatial adapter, a dual-stream tokenizer for low-frequency and high-gamma activity, and a leave-one-subject-out fine-tuning strategy. We evaluate CORTEG on two challenging regression tasks: public finger trajectory regression (n=9) and private audio envelope regression (n=16). CORTEG matches or exceeds the strongest task-specific baselines on both tasks: it reaches the highest mean correlation among compared methods on the public finger benchmark (gain not statistically significant on n=9 subjects), with larger and statistically significant gains on the audio task and in low-data per-patient calibration. Feature analyses align with neurophysiology, and latent manifolds capture low-dimensional finger-movement structure. CORTEG provides systematic evidence that scalp-EEG pretraining can be repurposed for ECoG decoding, enabling data-efficient intracranial BCIs that can adapt to new patients.

Self-supervised pretrained foundation models (FM) have shown early promise for non-invasive electroencephalogram (EEG) decoding applications. Many recent large-scale models converged on the approach of tokenizing raw EEG followed by masked reconstruction pretraining. However, this recipe has been shown to be suboptimal for data, like EEG, with high noise amplitude and information confined to limited dimensions such as narrow frequency bands. Building on this insight, we develop a novel contrastive-pretrained EEG model with multiscale temporal convolution input layers and Transformer encoder blocks (CoCoT). CoCoT matches or beats state-of-the-art reconstruction-pretrained EEG models on extensive benchmark decoding tasks with heterogeneous electrode configurations. Furthermore, CoCoT trained from scratch outperforms previous single-task decoding models and even rivals pretrained models, showcasing the architecture's flexibility and data efficiency. Through systematic ablations, including model architecture and pretraining objective, we demonstrate the viability of contrastive learning for building EEG FMs while suggesting key architectural design considerations, prompting further investigations in alternative large-scale pretraining strategies.

Finger-level motor decoding is important for naturalistic brain-computer interface (BCI) control, yet individual-finger decoding from scalp electroencephalography (EEG) remains challenging because finger representations are spatially close in the sensorimotor cortex and blurred by volume conduction. Leveraging the high spatial resolution of functional MRI (fMRI), we introduce fMRI Representation-Informed Shared-Space Training (FRIST), a two-stage EEG decoding framework that first learns fMRI-informed spectral projections from simultaneous EEG-fMRI recordings and then uses fMRI-derived class geometry to guide residual refinement of EEG predictions. FRIST transfers information across recordings through shared finger labels without requiring paired trials and uses only EEG at inference. We evaluated 12 able-bodied participants during movement execution (ME) and motor imagery (MI) under two-class and three-class chronological session-held-out decoding simulating the online scenario. Using EEGNet as the EEG feature extractor, FRIST increased group average accuracy from 66.93% to 74.53% for two-class ME, from 44.83% to 56.58% for three-class ME, from 80.78% to 85.63% for two-class MI, and from 60.93% to 69.90% for three-class MI compared with the EEG-only EEGNet baseline. FRIST is also shown to improve EEG-only decoding when the target participant's own fMRI data were unavailable. FRIST also generalized across multiple EEG decoding backbones, reaching 87.40% in two-class MI and 72.54% in three-class MI with EEG Conformer as the EEG feature extractor. These findings indicate that fMRI provide useful spatial constraints for EEG representation learning. FRIST improves noninvasive EEG-based finger-level BCI decoding, offering a multimodal strategy for integrating the spatial specificity of fMRI with real-time applicability of EEG.