X-Ray cardiac angiographic vessel segmentation based on pixel classification using machine learning and region growing
Authors: E O Rodrigues, L O Rodrigues, J J Lima, D Casanova, F Favarim, E R Dosciatti, V Pegorini, L S N Oliveira, +1 more
Organizations: Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTEPR), Pato Branco, Parana, Brazil · Graduate Program of Applied Sciences to Health Products, Universid ade Federal Fluminense(UFF), Niteroi, Rio de Janeiro, Brazil · Primary Health Care, Pato Branco Prefecture, Parana, Brazil · Innovation Office, Mass General Brigham Hospital, Cambridge, Massachusetts, United States of America
Abstract
This work proposes a pixel-classification approach for vessel segmentation in x-ray angiograms. The proposal uses textural features such as anisotropic diffusion, features based on the Hessian matrix, mathematical morphology and statistics. These features are extracted from the neighborhood of each pixel. The approach also uses the ELEMENT methodology, which consists of creating a pixel-classification controlled by region-growing where the result of the classification affects further classifications of pixels. The Random Forests classifier is used to predict whether the pixel belongs to the vessel structure. The approach achieved the best accuracy in the literature (95.48%) outperforming unsupervised state-of-the-art approaches.
Vascular structures in the retina contain important information for the detection and analysis of ocular diseases, including age-related macular degeneration, diabetic retinopathy and glaucoma. Commonly used modalities in diagnosis of these diseases are fundus photography, scanning laser ophthalmoscope (SLO) and fluorescein angiography (FA). Typically, retinal vessel segmentation is carried out either manually or interactively, which makes it time consuming and prone to human errors. In this research, we propose a new multi-modal framework for vessel segmentation called ELEMENT (vEsseL sEgmentation using Machine lEarning and coNnecTivity). This framework consists of feature extraction and pixel-based classification using region growing and machine learning. The proposed features capture complementary evidence based on grey level and vessel connectivity properties. The latter information is seamlessly propagated through the pixels at the classification phase. ELEMENT reduces inconsistencies and speeds up the segmentation throughput. We analyze and compare the performance of the proposed approach against state-of-the-art vessel segmentation algorithms in three major groups of experiments, for each of the ocular modalities. Our method produced higher overall performance, with an overall accuracy of 97.40%, compared to 25 of the 26 state-of-the-art approaches, including six works based on deep learning, evaluated on the widely known DRIVE fundus image dataset. In the case of the STARE, CHASE-DB, VAMPIRE FA, IOSTAR SLO and RC-SLO datasets, the proposed framework outperformed all of the state-of-the-art methods with accuracies of 98.27%, 97.78%, 98.34%, 98.04% and 98.35%, respectively.
Cerebrovascular research heavily relies on quantitative analysis of intracranial arteries from time-of-flight magnetic resonance angiography, yet existing processing pipelines remain limited by inconsistent artery labeling and a high manual correction burden. We present ArteryX, a toolbox for extracting features that standardizes artery classification across proximal and distal vascular territories. It integrates segmentation handling, isotropic processing, vessel-fused graph construction, and constrained landmark-based classification within a unified artery-specific feature reporting and reproducible workflow. The toolbox extracts morphological, topological, and complexity features including total length, mean radius, volume, surface area, branch count, tortuosity, and fractal dimensionality for standardized artery-segments. Test-and-validation were performed using three complementary datasets: (1)TopBrain-Challenge benchmarking with annotated arteries, (2)synthetic known-reference validation, and (3)exploratory in-vivo cohort of cerebral small vessel disease. In TopBrain analyses, ArteryX with supervised nnUnet segmentation showed minimal bias, while iCafe showed the highest bias and a large limit-of-agreement. ArteryX consistently demonstrated robust downstream quantification performance across segmentation sources (unsupervised/supervised). Agreement analyses showed minimal bias for radius and good sensitivity of extent-dependent metrics throughout the noisier segmentations compared to the state-of-the-art iCafe-toolbox. Furthermore, a stage-wise human-in-the-loop protocol showed lower intervention time than iCafe. In an in-vivo-cohort (48CSVD+, 20CSVD-), ArteryX-derived distal and territory-level features showed group-level differences, not evident with iCafe. To facilitate adoption-and-reproducibility, ArteryX is designed with versioned builds, tutorials, and documentation.
Vessel segmentation in X-ray coronary angiography (XCA) is a fundamental step for quantitative coronary analysis and subsequent assessment of coronary artery disease. However, accurate vessel segmentation remains challenging because of imaging noise, complex bifurcations, and the overlap of vessels and background structures, which can lead to disrupted vascular connectivity and missed small branches. In this work, we propose BSC-Net, a ResNet-U-Net-based framework tailored to improve small-vessel representation and repair vascular structural continuity. BSC-Net enhances small-vessel representation through targeted sampling and improves vascular structural continuity by integrating long-range contextual modeling and Edge-Informed Loss (EIL). BSC-Net was validated on two public XCA datasets, demonstrating state-of-the-art (SOTA) performance in coronary vessel segmentation with Dice and IoU scores of 77.8%/90.6% and 64.5%/83.0%, respectively. Furthermore, based on the obtained vessel segmentation, we performed automated quantitative coronary analysis and derived clinically relevant morphological and hemodynamic parameters, including stenosis ratio, time-to-peak, and relative propagation velocity. These results demonstrate that BSC-Net produces accurate vessel segmentation results with preserved vascular continuity for quantitative coronary assessment, enabling reliable downstream analysis and clinical evaluation of coronary artery disease.