Prototype-based explanations offer an intuitive, example-based approach to support the interpretability of machine learning black box classifiers but often lack feature-level granularity. We introduce a framework that integrates feature importance at two levels to address this gap. First, for local explanations, we propose \textit{alike parts}: a method that uses feature importance scores to highlight the most relevant, shared feature subsets between a classified instance and its nearest prototype, guiding user attention. Second, we augment the global prototype selection objective function with a feature importance term to actively promote diversity in the feature attributions of the selected prototypes. Experiments on six benchmark datasets show that this augmented selection process maintains or, in some cases, increases the prediction fidelity of the surrogate model, suggesting that feature diversity does not compromise model fidelity.
Explanations of machine learning models are usually judged by criteria that are hard to compare. We propose a simpler test: if an explanation really describes how a model uses its features, it should be possible to rebuild the model's predictions from it. We turn each explanation into a predictor by reading each feature's effect and adding them up, and measure how well that predictor reproduces the model on unseen data. Nothing is fitted, so the score reflects the explanation itself. The test applies to any explanation that can be written as a function of the features; we demonstrate it on partial dependence plots (PDP), accumulated local effects (ALE), SHAP and LIME. We prove that summing partial dependence curves gives the best possible additive summary of a model when its features are independent, and that this fails when they are dependent. Across 13 real datasets and 9 synthetic designs and four model families, which method scores best depends entirely on feature dependence: where features are independent SHAP is slightly worse than PDP, exactly as the theory predicts; on dependent real data SHAP leads. Some widely used quality metrics even prefer a damaged explanation to an intact one.
Prototypical part-based models provide explainable predictions by comparing input regions to learned prototypes. However, current approaches are burdened by complex, multi-stage training pipelines and heavily rely on auxiliary regularization to prevent prototype collapse. To overcome these limitations, we introduce Orthonormal Prototype Alignment Learning (OPAL), a single-stage, end-to-end framework that simplifies interpretable classification. Our approach anchors the latent space using predefined orthonormal bases, embedding each class within a dedicated subspace spanned by fixed part-prototypes. To achieve precise part localization, OPAL enforces spatial competition across feature maps. This mechanism isolates sparse, discriminative regions, directing each prototype to consistently attend to the same semantic concept across different images. By framing classification as a direct representation alignment task, our method eliminates the need for auxiliary losses. Extensive experiments on fine-grained benchmarks demonstrate that OPAL outperforms both its non-interpretable counterparts and state-of-the-art part-prototype methods, delivering granular visual explanations by explicitly revealing the specific image regions driving every prediction. Code is available at https://github.com/ilancarretero/OPAL.
Ilán Carretero, Gustavo Jesús Angulo, Rocío del Amor +1
Prototype-based neural networks aim to provide intrinsic interpretability by grounding predictions in a small set of part prototypes. However, modern vision backbones typically operate in normalized, directional embedding spaces where each semantic part exhibits substantial intra-class variability. As a result, point prototypes often become redundant or unstable, hurting both explanation quality and robustness. We propose vMFProto, a distributional part-prototype framework that models each class as a mixture of von Mises-Fisher components on the hypersphere. Each prototype learns its own concentration, capturing part-specific variability, and we use entropic optimal transport (OT) to obtain structured patch-to-prototype assignments. A two-stage training schedule performs OT-driven prototype discovery followed by end-to-end refinement with patch-level distillation and distribution-aware diversity regularization. Experiments with frozen DINO backbones show that vMFProto achieves leading consistency and distinctiveness on CUB-200-2011 and competitive classification accuracy across CUB, Stanford Dogs, and Stanford Cars. Qualitative results confirm that vMFProto yields localized, non-redundant part evidence.