A comparative study of accuracy and rollout stability of temporal surrogate models

For autoregressive modeling of chaotic dynamical systems over long time horizons, the stability of both training and inference is a major challenge in building scientific foundation models. We present a hybrid technique in which an autoregressive transformer is embedded within a novel shooting-based mixed finite element scheme, exposing topological structure that enables provable stability. For forward problems, we prove preservation of discrete energies, while for training we prove uniform bounds on gradients, provably avoiding the exploding gradient problem. Combined with a vision transformer, this yields latent tokens admitting structure-preserving dynamics. We outperform modern foundation models with a $65\times$ reduction in model parameters and long-horizon forecasting of chaotic systems. A "mini-foundation" model of a fusion component shows that 12 simulations suffice to train a real-time surrogate, achieving a $9{,}000\times$ speedup over particle-in-cell simulation.

Autoregressive neural simulators now match classical solvers on short-horizon prediction of physical systems, yet their accuracy degrades rapidly when rolled out over long horizons. In this work, we identify transient amplification of perturbations around rollout trajectories as a structural mechanism driving rollout error. Using a linearization analysis we show that when the Jacobians along an autoregressive trajectory are non-normal and non-commuting, the model amplifies errors transiently, resulting in model rollout drift even when the overall system is asymptotically stable. Building on the analysis, we propose commutativity regularization: a combination of two penalties designed to reduce the normality defect of individual Jacobians and the commutator norm of Jacobians across steps. The penalties are estimated with Jacobian-vector products and have no inference-time cost. We show a propagator bound that quantifies rollout error under approximate commutativity and normality. We evaluate UNet and FNO variants with commutativity regularization on 1D and 2D spatio-temporal data in synthetic and real settings, showing successful long-horizon rollouts over thousands of steps. Further, we show that the method improves FourCastNet climate forecasts on ERA5 without using any new data. The gain is most pronounced out-of-distribution: trained on trajectories of a few hundred steps, regularized models remain in-distribution for thousands of rollout steps on initial conditions where baselines diverge.

Fast surrogate modeling for high-dimensional physical dynamics requires more than low short-term error: useful models must roll out efficiently while preserving the statistical structure of long trajectories. Neural operators provide inexpensive autoregressive forecasts but can drift in turbulent regimes, whereas rolling diffusion and latent generative surrogates can represent stochastic transitions at the cost of multi-step denoising, noise-schedule design, or auxiliary compression models. We propose MeanFlow Long-term Invariant Spatiotemporal Consistency Autoregressive Models (MeLISA), a latent-free autoregressive generative surrogate built on pixel-space MeanFlow. MeLISA defines a blockwise stochastic transition kernel that generates each forecast block with a single model evaluation, avoiding latent encoders and iterative diffusion solvers at inference time. To stabilize long-horizon rollouts, MeLISA combines a Window-Consistency MeanFlow objective that learns conditional spatiotemporal generation from partially observed temporal windows with a Time Increment Consistency loss that constrains multi-lag finite increments and targets temporal-correlation structure. We evaluate MeLISA with compact UNet and scalable DiT backbones on two high-resolution benchmarks, extended 2D Kolmogorov flow at $256 \times 256$ and turbulent channel-flow slice at $192 \times 192$. MeLISA outperforms neural-operator baselines on short-term forecasting accuracy and long-horizon statistical metrics, including energy spectra, turbulent kinetic energy, and mixing-rate-related dynamics, while achieving inference speeds comparable to, and in some cases faster than, neural operators. Compact 3.7-5.7M-parameter variants already deliver strong parameter efficiency, and DiT variants provide a scalable path up to 150M parameters. Overall, MeLISA benefits both rollout efficiency and long-horizon statistical accuracy.