Tool-Call Dependency Structure is Linearly Decodable in LLM Agent Residual Streams

Can one graph represent every kind of LLM agent's run? A trace records what each step did, never what it relied on, the state it read, and the results it reused. GRADE recovers that missing layer: it models any run as one graph over its step nodes with two edge layers, execution edges (what ran in what order) read from the trace for free, and dependency edges (what each step relied on) rarely logged, so each is graded by how it is known, observed, declared, or inferred. One representation, and each layer earns its place. Across six corpora of LLM agents spanning tool use, coding, and the web, the dependency layer can predict failure where run size is weak and, under leave-one-corpus-out transfer, stays above chance on every held-out class while run size fails. Meanwhile, the execution layer localizes the faulting step in a failed multi-agent run. This work also provides a more in-depth analysis of why generic graph neural networks may misread the dependency layer, unlike our feature-based alternative. The same graph representation opens further uses, carrying from failure diagnosis in a single run to efficiency and robustness optimization at scale.

Tool-augmented LLM agents tend to call tools indiscriminately, even when the model can answer directly. Each unnecessary call wastes API fees and latency, yet no existing benchmark systematically studies when a tool call is actually needed. We propose When2Tool, a benchmark of 18 environments (15 single-hop, 3 multi-hop) spanning three categories of tool necessity -- computational scale, knowledge boundaries, and execution reliability -- each with controlled difficulty levels that create a clear decision boundary between tool-necessary and tool-unnecessary tasks. We evaluate two families of training-free baselines: Prompt-only (varying the prompt to discourage unnecessary calls) and Reason-then-Act (requiring the model to reason about tool necessity before acting). Both provide limited control: Prompt-only suppresses necessary calls alongside unnecessary ones, and Reason-then-Act still incurs a disproportionate accuracy cost on hard tasks. To understand why these baselines fail, we probe the models' hidden states and find that tool necessity is linearly decodable from the pre-generation representation with AUROC 0.89--0.96 across six models, substantially exceeding the model's own verbalized reasoning. This reveals that models already know when tools are needed, but fail to act on this knowledge during generation. Building on this finding, we propose Probe&Prefill, which uses a lightweight linear probe to read the hidden-state signal and prefills the model's response with a steering sentence. Across all models tested, Probe&Prefill reduces tool calls by 48% with only 1.7% accuracy loss, while the best baseline at comparable accuracy only reduces 6% of tool calls, or achieves a similar tool call reduction but incurs a 5$\times$ higher accuracy loss. Our code is available at https://github.com/Trustworthy-ML-Lab/when2tool

LLM-powered agents increasingly tackle complex tasks by invoking tools, querying databases, executing code, and manipulating intermediate artifacts. These agents follow trajectories that are typically stored as chronological logs, obscuring the underlying dataflow -- the dependencies between their actions and the artifacts they create and manipulate. This limits developers' ability to understand the agents' trails, compare executions, debug failures, and re-use the computations. We present AgentTrails, a prototype system for agent provenance and sensemaking. AgentTrails converts raw trajectories into structured provenance graphs, where tool calls are modeled as computational actions and inputs and outputs as data artifacts. The system supports the comparison of executions by placing multiple provenance graphs on a shared canvas and constructing a joined quotient graph that aligns recurring tools, artifacts, and dependency structures across trajectories. On top of this representation, AgentTrails supports pattern extraction, downstream analysis, and skill abstraction. We demonstrate AgentTrails on real-world agent trajectories, showing that it reveals hidden dependencies, aligns divergent executions, and surfaces recurring tool-use patterns beyond chronological logs.