Mean-Shift PCA by Knockoff Mean

Principal component analysis (PCA) is a fundamental tool to reduce the dimensionality of the data in many applications. PCA finds a few signal directions that contain most of the variability of the data by computing the eigenvectors of the sample covariance matrix. In this work, we focus on the spiked covariance model, in which the data vectors are defined by a few orthogonal signals plus an isotropic Gaussian noise, and our goal is to estimate one or more of the leading signals. Our main theoretical finding is that the subspace spanned by several leading eigenvectors of the sample covariance matrix contains significant information about the desired signals long before the individual eigenvectors converge to the population principal components. To prove this, we derive a posteriori bounds for the angle between the subspace spanned by the desired population signals and the subspace obtained from the sample using perturbation theory for singular vectors. This leads to a new algorithm, SuperPCA (SUbsPace subsamplER PCA), which capitalizes on an approximate eigenspace of the sample covariance matrix to find the leading signals far more efficiently and accurately than classical PCA in the high-dimensional, multi-signal setting. SuperPCA exploits only a small number of subsampled coordinates of the data, which can lead to tremendous savings in data acquisition cost, especially when the signals are approximately sparse. For the same number of measurements, SuperPCA can offer a factor $10$ improvement in accuracy compared to the classical PCA method.

While principal component analysis (PCA) is a fundamental tool for dimensionality reduction, its dense representations make it ill-suited for high-dimensional data. Existing methods address this by promoting sparsity through explicit $\ell_1$-penalties, but these are not obvious to tune due to the unsupervised nature of the task. In contrast, we propose Adversarial PCA (AdvPCA), which leverages robust optimization to achieve sparsity by optimizing the reconstruction objective against bounded, worst-case latent space perturbations. We show that this formulation admits a closed-form reduction, leading to a practical iterative algorithm that alternates between adversarial linear regression-style updates for the sparse encoder and orthogonal updates for the decoder. By theoretically characterizing the solution, we derive a data-adaptive parameterization that allows the algorithm to perform effectively out of the box. We validate these claims through numerical experiments on synthetic and real-world genomics data.

Distributed principal component analysis (PCA) produces node-level estimates of both a mean vector and a principal subspace. Robustly aggregating these heterogeneous objects requires a relative scale between mean error and subspace error. We study a scale-calibrated median-of-means estimator for this problem using the product geometry of Euclidean space and the Grassmann manifold. A node-level PCA expansion shows that the mean component has the usual linear influence, whereas the subspace component is an eigengap-weighted covariance perturbation. We prove a local reduction showing that the proposed product-manifold median-of-means estimator is asymptotically equivalent to a scaled spatial median of node influence errors. This yields fixed-node non-Gaussian limits, growing-node Gaussian limits with finite-block bias, and an explicit scale-dependent covariance formula. We propose robust block-scale and inference-optimal calibration rules, establish high-probability median-of-means bounds, characterize factorwise bad-node influence, and prove node-bootstrap validity. Simulations and large-scale single-cell RNA-seq data show that scale calibration adapts to eigengap-driven subspace uncertainty and provides a robust distributed PCA summary.