Human-Alignment, Calibration, and Activation Patterns in Large Language Model Uncertainty

Existing calibration methods for Large Language Models (LLMs) often overlook a critical dimension of trustworthiness: a model's {\em behavioral robustness} to irrelevant or misleading information. In this paper, we argue that a model's true confidence should reflect its stability under cognitive pressure. We introduce \textsc{CaliDist}, a novel post-hoc calibration approach that directly measures and penalizes a model's susceptibility to distraction. \textsc{CaliDist} quantifies how an LLM's predictions and uncertainty change when its input prompt is perturbed with semantic \textit{distractors}. This stability (or lack thereof) signal is then used to adaptively scale the model's initial confidence score. Our extensive experiments on seven Natural Language Understanding classification benchmarks using six distinct LLMs show that \textsc{CaliDist} consistently achieves lower Expected Calibration Error (ECE) and Brier Score compared with strong baselines. Remarkably, our method reduces the ECE from 23% to 7% on average--a relative improvement of 70%--demonstrating that behavioral stability is a powerful signal for calibration. We make our code and datasets available at github.com/m-anas-j/CaliDist.

The maximum softmax probability (MSP) represents a default approach when evaluating uncertainty quantification for language model generation with structured output. Although cheap, it is often miscalibrated. Methods that probe the model's internal activations feed raw hidden states into opaque classifiers, reading activations as static snapshots and leaving implicit the layer-wise trajectory by which a representation is formed. Yet, similar endpoints can arise from very different paths, and how evidence accumulates, reinforces, or reverses across depth might reveal uncertainty that final probabilities obscure. We extract eleven scale-invariant geometric features, tracing the cumulative path of per-layer MLP updates, and feed them to a sparse linear probe. The probe outperforms MSP under selective abstention, with gains scaling with baseline miscalibration up to 21 AURC points. Because every feature has a closed-form geometric meaning, the probe's coefficients trace how and where along depth errors take shape -- which layers commit prematurely, which contradict the running state, where trajectories drift away from their endpoint.

Prior work has shown that instruction-tuned large language models (LLMs) are less well calibrated than their base pre-trained counterparts. However, little is known about the frequently used chat template's effect on the calibration of conversational LLMs. In this work, we investigate the mechanisms driving this miscalibration by decoupling the effects of the post-training algorithm and the chat format. We find that, while instruction tuning fundamentally harms calibration, the chat template aggravates the issue through an "ownership bias" -- models are significantly more confident in their own answers than in identical answers provided by a user. Extensive experiments across six recent open-weight LLMs, three benchmarks, and three confidence elicitation methods show that models assign up to 26% higher confidence to their own responses. Leveraging this insight, we propose a simple inference-time strategy: framing the model's answer as user input during confidence elicitation. This approach significantly reduces overconfidence and improves calibration by up to 26% without the need for retraining, narrowing the gap between base and instruction-tuned models.