cs.LGMay 29, 2026

An Efficient and Scalable Graph Condensation with Structure-Preserving

Authors: Yulin HuFuyan OuYe Yuan

Organizations: Southwest University Chongqing, China

Abstract

Graph condensation (GC) is pivotal for enabling Graph Neural Networks (GNNs) deployment in resource-constrained scenarios by compressing large-scale graphs into compact synthetic counterparts. Existing GC methods commonly suffer from computational inefficiency due to coupled optimization as well as encountering poor generalization across GNN architectures. To address these challenges, this study proposes an Efficient and Scalable Graph Condensation with Structure-Preserving (SP-ESGC), which possesses a decoupled design that separates node condensation from graph structure generation. Specifically, it first employs heat kernel feature propagation to generate node representation via spectral graph theory-inspired diffusion. Further, a novel hybrid clustering strategy is designed to extracts discriminative intra-class centroids from the node representation. Finally, a pre-trained edge predictor infers transferable structural patterns from the original graph, ensuring accurate synthetic graph generation. Extensive experiments on real-world graph datasets demonstrate that the proposed SP-ESGC implementes a precise GC with significantly high computational efficiency. Moreover, SP-ESGC also generalizes well across diverse GNN architectures.

Explore similar work

May 17, 2026cs.LG

Position: Graph Condensation Needs a Reset -- Move Beyond Full-dataset Training and Model-Dependence

Graph Neural Networks (GNNs) are powerful tools for learning from graph-structured data, but their scalability is increasingly strained by the size of real-world graphs in domains like recommender systems, fraud detection, and molecular biology. Graph condensation -- the task of generating a smaller synthetic graph that retains the performance of models trained on the original -- has emerged as a promising solution. However, the dominant approach of gradient matching introduces a fundamental contradiction: it requires training on the full dataset to create the compressed version, thereby undermining the goal of efficiency. Worse still, these methods suffer from high computational overhead, poor generalization across GNN architectures, and brittle reliance on specific model configurations. Equally concerning is the community's reliance on misleading evaluation protocols such as node compression ratios, which fail to reflect true resource savings, condensation overhead, and illusory application to neural architecture search. These shortcomings are not incidental -- they are systemic, and they obstruct meaningful progress. In this position paper, we argue that graph condensation, in its current form, needs a reset. We call for moving beyond full-dataset training and model-dependent design, and instead advocate for methods that are lightweight, architecture-agnostic, and practically deployable. By identifying key methodological flaws and outlining concrete research directions, we aim to reorient the field toward approaches that deliver on the true promise of condensation: efficient, generalizable, and usable GNN training at scale.
Mridul Gupta, Samyak Jain, Vansh Ramani +2
Jul 3, 2026cs.LG

Heterogeneous Graph Condensation via Role-Aware Clustering

Heterogeneous Graph Neural Networks (HGNNs) have exhibited remarkable efficacy in modeling complex systems with multiple types of nodes and relations, yet their training on large-scale heterogeneous graphs remains computationally prohibitive. Although graph condensation methods can effectively improve learning efficiency on large-scale graphs, existing condensation processes are mainly designed for homogeneous graphs and typically rely on computationally expensive gradient matching or bilevel optimization paradigms, rendering them impractical for heterogeneous settings. To address these limitations, we propose HGC-RC, a simple yet effective role-aware heterogeneous graph condensation framework. Specifically, HGC-RC first extracts semantically enhanced node embeddings via lightweight propagation. It then introduces a role-aware hybrid clustering strategy consisting of class-partitioned clustering for labeled target nodes to preserve class distributions and unsupervised type-wise clustering for non-target nodes to retain critical cross-type connectivity. Finally, a compact heterogeneous graph is efficiently reconstructed based on the resulting cluster assignments. Extensive experiments demonstrate that HGC-RC outperforms state-of-the-art baselines, offering a practical pathway to accelerate HGNN training on large-scale heterogeneous graphs without sacrificing task performance
Fuyan Ou, Yulin Hu, Ye Yuan
May 11, 2026cs.LG

Anchor-guided Hypergraph Condensation with Dual-level Discrimination

The increasing prevalence of large-scale hypergraphs poses significant computational challenges for hypergraph neural network (HNN) training. To address this, hypergraph condensation (HGC) distills large real hypergraphs into compact yet informative synthetic ones, beyond graph condensation (GC) methods limited to pairwise relations. However, existing HGC methods rely on decoupled training architectures, where structure generators are pre-trained on the original hypergraph but not jointly optimized with condensed features during refinement, resulting in misaligned structures that degrade downstream utility. Moreover, trajectory-based optimization incurs substantial computational overhead in refinement, limiting condensation efficiency. To tackle these issues, we propose \textbf{A}nchor-guided \textbf{H}yper\textbf{G}raph \textbf{C}ondensation with \textbf{D}ual-level \textbf{D}iscrimination (\textbf{AHGCDD}), which consists of three key components: (1) a node initialization module based on Heat Kernel PageRank (HKPR) to encode structural knowledge into feature semantics; (2) an anchor-guided hyperedge synthesis strategy for joint optimization of condensed features and structure; (3) a theoretically grounded dual-level discrimination objective for utility-preserving condensation without redundant HNN training. Extensive experiments demonstrate the superior effectiveness and efficiency of AHGCDD.
Fan Li, Xiaoyang Wang, Chen Chen +1