Predict and Reconstruct: Joint Objectives for Self-Supervised Language Representation Learning

Joint-Embedding Predictive Architectures (JEPAs) are effective for images, video, and audio, yet deterministic JEPA-style latent prediction has not become a standard objective for text encoders. We argue that this gap reflects a mismatch between squared-error latent prediction and the conditional structure of language. The key requirement is conditional concentration: given a context and target location, the target representation should lie near a single meaningful point. Local image prediction often satisfies this through spatial continuity, whereas masked text can admit multiple valid token or span completions whose representations need not share a coherent center. We formalize this mismatch through three conditions---predictability, non-collapse, and low conditional variance---and show how their failure creates centroid degeneracy and collapse pressure in text. Matched I-JEPA and T-JEPA experiments reveal the predicted sequence: mutual-information saturation and elevated target variance precede train--validation instability, effective-rank degeneration, cosine collapse, and poor downstream transfer. The same pattern appears across five independent data seeds, indicating that it is not a sampling artifact. These results do not rule out predictive learning for language; they show that text-compatible JEPA objectives must preserve multiple plausible completions rather than compress them into a single latent point.

Protein language models are trained primarily with masked language modeling (MLM), which predicts masked amino-acid identities. Joint-embedding predictive architectures (JEPA) instead predict latent representations, but have not been applied to proteins. ProteinJEPA supplements MLM with a cosine loss for predicting the half-depth hidden states of a teacher given the unmasked sequence. On 19 tasks, with ESM2 at 35M and 150M parameters and three pretraining seeds, MLM+JEPA outperforms compute-matched and step-matched MLM-only continued training in 78 and 76 of 114 comparisons (14 losses, 22 ties). The median compute-matched gain is $+0.0106$ on structure- and homology-sensitive tasks versus $+0.0041$ elsewhere, led by SCOPe-40 retrieval and remote homology with improvements of 6.1 percentage points in Recall@1 and 2.7 points in accuracy, respectively. Gains on these tasks increase with model size from 8M to 150M. Against the off-the-shelf checkpoint, MLM+JEPA wins 81 of 114 comparisons (median $+0.0068$) without improving MLM loss. In random initialization the gain is smaller and replicates inconsistently across seeds ($p{=}0.059$). The same recipe improves the causal ProGen3 model, beating a compute-matched next-token-prediction control on 12 of 16 tasks. Ablations show that cosine loss beats mean squared error, while adding shallower targets removes most of the task gain. JEPA-only training collapses downstream performance: latent prediction complements MLM rather than replacing it. Code: https://anonymous.4open.science/r/protJepa-FF24

Token prediction is a central pre-training objective for modern language models. Despite its empirical success, why token prediction learns broadly useful representations remains incompletely understood. We develop a statistical framework connecting token prediction with representation geometry, encoder approximation, and downstream performance. Under a softmax prediction head, we show that accurate token prediction organizes token embeddings according to similarities between the distributions of contexts in which different token types appear, as measured by Hellinger distance, with explicit errors governed by prediction accuracy and token frequency. Meanwhile, the contextual representation provides a low-dimensional coordinate for the conditional distribution of the target token relative to these embeddings. We further introduce a self-consistency principle showing that repeated applications of a shared representation block can progressively refine the contextual representation without introducing additional block parameters. Among representations with the same prediction accuracy, this recurrent construction favors those that can be stably reconstructed from their contexts. Finally, we establish downstream guarantees for token generation, token community recovery, and classification by a linear probe, showing how prediction accuracy and recovered geometry translate into performance beyond the pre-training objective. Together, these results explain how the simple objective of predicting tokens can recover semantic geometry and produce broadly useful representations. A controlled simulation illustrates the theoretical mechanisms.