Intercomparison of Machine Learning Algorithms for Remote Sensing-based In-season Crop Mapping

Operational crop mapping requires models that generalise across years, resolve fine-grained crop taxonomies, and distinguish cropland from surrounding landscapes. However, existing crop mapping datasets enable evaluation of these requirements only in isolation. We therefore introduce SwissCrop25, a national-scale crop mapping benchmark dataset spanning seven growing seasons (2019-2025). SwissCrop25 combines Sentinel-2 time series, daily temperature observations, a fine-grained 73 crop taxonomy including grassland management types, and 5 explicit non-crop land cover classes. To evaluate realistic deployment conditions, we define a leave-one-year-out protocol with joint cropland delineation and crop classification for benchmarking representative crop mapping architectures. Evaluating U-TAE (convolutional temporal-attention model), TSViT (transformer-based spatio-temporal model), and Galileo (EO foundation model) reveals differences between architectures hidden by conventional benchmarks. In this setting, domain-specific models outperform Galileo, with TSViT achieving the best overall performance and a 12 pp macro-mIoU advantage over U-TAE. SwissCrop25 also exposes substantial interannual distribution shifts and shows that incorporating temperature-derived phenological information improves robustness. Finally, in-season evaluation reveals a trade-off between models, with U-TAE performing better early in the season and TSViT gaining an advantage later through improved rare-class discrimination. SwissCrop25 provides a challenging testbed for evaluating crop mapping systems under realistic operational conditions and is publicly released at https://huggingface.co/datasets/EOA-team/SwissCrop25 .

Geospatial foundation models provide reusable representations of satellite imagery that support downstream mapping with limited task-specific modelling. We evaluate whether annual AlphaEarth embeddings support binary cultivated-versus-non-cultivated mapping in Maine, USA, using 192 spatially separated patches and labels derived from the USDA Cropland Data Layer (CDL). Without fine-tuning the foundation model, a lightweight classifier reaches 93.7% overall accuracy and 90.8% balanced accuracy on held-out patches. Logistic regression is within 0.3 percentage points of a gradient-boosted ensemble, while a nearest-class-centroid rule, which uses class centroids but fits no parameters, reaches 90.2%. A balanced sample of 60,000 labelled pixels is within 1.3 percentage points of the full pool of 8.6 million pixels; because pixels are spatially autocorrelated, this result concerns pixel-sample efficiency rather than 60,000 independent annotation sites. In a same-region transfer experiment, classifiers trained in one year remain accurate across 2018 to 2023. Against a blind, two-interpreter consensus at 385 randomly sampled points in one contiguous 2023 block, the AlphaEarth-plus-random-forest map agrees at 95.3% ($κ=0.82$), compared with 91.7% for the CDL ($κ=0.72$; exact two-sided McNemar $p=0.0161$). This local result is consistent with partial smoothing of CDL label noise, but it does not establish statewide correction of the reference product. On the same points, the difference from a fine-tuned TerraMind segmentation model is not statistically significant (95.3% versus 93.5%; $p=0.14$), and the experiment is not a controlled comparison of computational cost. These results support frozen geospatial embeddings as a low-compute candidate for regional cropland mapping, subject to the limits of a single-state study, a 30 m-derived training reference, and a one-block human validation.

Field-scale crop maps support supply-chain forecasting and policy, yet statewide crop identification still often depends on retrospective surveys or remote-sensing workflows built around hand-engineered spectral features. Those pipelines can be accurate, but they require repeated preprocessing and often lose robustness across years. This study evaluated whether Google DeepMind's AlphaEarth geospatial embeddings can serve as an analysis-ready alternative for mapping processing tomato systems in California. LandIQ 2018 crop polygons were used to assemble a balanced reference dataset of 4,742 tomato and 4,742 non-tomato fields. For each polygon, 64-band AlphaEarth embedding chips were extracted and aligned with binary masks, then divided into spatially independent training (n = 6,638), validation (n = 1,422), and test (n = 1,424) sets. A U-Net segmentation model was trained on AWS SageMaker using a composite masked binary cross-entropy and soft Dice loss. To complement hard predictions, Monte Carlo dropout was retained at inference and repeated 100 times per chip to estimate predictive mean and variance. On the independent test set, the model achieved 99.19% pixel accuracy, 98.69% precision, 99.40% recall, 99.04% F1 score, 98.11% intersection over union, and 99.02% chip accuracy. Uncertainty maps were consistently highest near field edges and low within field interiors. The results show that AlphaEarth embeddings retain crop-relevant spatial and temporal structure and can support accurate, field-scale tomato mapping without manual feature engineering.