Vector Space of Cycles

Understanding how the architecture of neural networks shapes the computations they carry is a central challenge in neuroscience and machine learning. While specific circuit architectures have been linked to particular network computations and theoretical bounds on expressivity of broad classes of networks have been found, we are still missing general principles connecting the structure of finite networks to their computational capabilities. Here, we characterize the computational abilities of recurrent neural networks as a function of their connectivity by training a large collection of different networks to compute a large set of Boolean functions. For small networks, we constructed the complete ``catalogs'' of network-function performance, which revealed that computational capacity varies widely across architectures and that most networks show poor performance, and most functions are hard to compute. However, we show that having local 2- and 3-cycles in a network strongly enhances its computational ability, and networks with such cycles are often the minimal architectures that can solve particular functions. We further show that a small set of structural statistics accurately predict networks' performance. Extending our analysis to large networks showed that typical networks fail even to approximate a randomly selected function. Surprisingly, adding a small number of sparsely connected biologically-inspired interneurons to the network dramatically increases computational capacity. As in small networks, adding short cycles improved networks' capacity, outperforming acyclic or reachability-matched controls. Thus, our results identify local cycles as design principles linking neural connectivity to computational power, and offer a general framework to explore structure-function relations in computing networks.

Oscillatory neural signals such as electroencephalography (EEG) and local field potentials (LFPs) show phase relationships that coordinate communication across brain regions. Modern recordings capture hundreds of channels across many frequency bins, yet standard phase analyses are restricted to only a few variables. The Torus Graph (TG) model, an exponential-family distribution over phases whose univariate and pairwise potentials generalize von Mises distributions, infers principled structure among oscillations but models only static, undirected dependencies and is limited to $\sim \! 100$ variables because its score matching inference scales as $\mathcal{O}(d^{6})$. We introduce a stochastic score matching procedure that reduces the per-iteration cost to $\mathcal{O}(d^{2})$, enabling inference on datasets with thousands of variables. This scalable foundation supports analyses of 1,860 frequency-phase features from multi-electrode LFPs and enables two extensions previously inaccessible to TGs or classical circular statistics: (i) a TG Hidden Markov Model capturing state-dependent phase-coupling changes (e.g., spindle-related states during sleep) and (ii) an autoregressive TG inferring directional interactions via transfer-entropy estimation. Applied to LFP recordings, these models reveal state-dependent phase-interaction patterns between wakefulness and NREM sleep. Together, they enable systematic, large-scale mapping of dynamic and directional phase relationships across brain and cognitive states.

Many multivariate dynamical systems are observed only through trajectories, leaving the mechanisms governing their joint dynamics hidden. Existing approaches can impose interpretable dynamics or learn flexible state transitions, yet the resulting interaction structure is typically either specified in advance or left implicit within the learned dynamics. We introduce MF-Net, a recurrent dynamical model that represents all variables in a shared field state and updates this state through a learned relation law. Each variable carries a field component, and these components evolve jointly through a learnable mechanical transition. Here, mechanical refers to the relation-to-motion organization of the transition, where learned relations shape state-dependent flows, field responses, and motion tendencies that move the field state forward. The resulting structure is part of the rollout itself: learned relations influence how the field moves, and the same internal quantities support both forecasting and structural readout. Across known-law interaction systems, chaotic benchmarks, real neural recordings, and ecological time series, MF-Net achieves competitive short- and medium-horizon forecasting while retaining inspectable structural readout. On the 40-dimensional Lorenz--96 testbed, MF-Net achieves an eight-step $R^2$ of $0.798\pm0.018$; across five seeds, its learned relation matrix recovers the local coupling support with a local/nonlocal strength ratio of $19.80\pm1.00$ and Precision@$K$ of $1.000\pm0.000$. MF-Net provides a structure-readable dynamical modeling framework in which learned relations are trained through forward evolution and, on real data, interpreted as functional predictive couplings under appropriate observational limits.