Different Layers, Different Manifolds: Module-Wise Weight-Space Geometry in Transformer Optimization

Feed-forward networks (FFNs) account for a large fraction of Transformer parameters, yet their hidden width is usually constant across depth. We ask whether this capacity can instead be allocated from a forward-pass measurement of layer behavior. We view each FFN as transporting a cloud of token representations and quantify the induced geometric change using correspondence-preserving shift, Gromov-Wasserstein distortion, and degree-one persistent homology under raw and scale-normalized metrics. A layerwise approximation surrogate yields an exact fixed-budget optimizer. Across seven pretrained language models, raw Euclidean work largely tracks residual-norm growth, whereas normalized work is predominantly front-loaded. Gromov-Wasserstein work is more consistently associated with perturbation-based layer sensitivity than the finite-sample topological estimate. In paired 128M and 256M training runs, several normalized-work schedules reduce mean validation loss relative to both uniform width and a hand-designed cosine taper. With the amplified paired differences at 440M, the best geometry-based allocations improve over uniform substantially larger than the cosine taper, while the anti-topological raw control is worse than uniform.

Cross-entropy pretraining and preference alignment update the same transformer weights, but leave geometrically distinct traces. We characterise this asymmetry with a relative-subspace-fraction probe that tracks how weight deltas align with residual-stream activation subspaces and with the prediction subspace defined by the unembedding. Alignment deltas concentrate in the read pathway ($W_Q$, $W_K$), along principal directions of attention-input activations, while remaining near-isotropic in the write pathway ($W_O$, $W_2$) relative to the prediction subspace. We explain this pattern through anisotropic gradient accumulation: updates to a matrix $W$ are sums of outer products $δ_t a_t^\top$, and inherit directional structure from whichever side has concentrated covariance. For read-pathway matrices, this side is the input activation $a_t$, whose covariance is spiked in trained transformers and therefore produces objective-agnostic concentration. For write-pathway matrices, the relevant side is the upstream gradient $δ_t$, whose anisotropy depends on the loss. Cross-entropy supplies the canonical sharp per-sample signal, inducing write-pathway prediction geometry during pretraining; alignment objectives typically add little further write-side concentration. We support this explanation with a within-checkpoint trajectory, a graded contrastive-objective control, and a closed-form rank-1 intervention with matched direction controls, providing causal evidence for the proposed weight-space geometry.

We present a continuous geometric framework that models the discrete algebraic operations of the Transformer architecture as an integro-differential equation (IDE) on a semantic fiber bundle $\calE = \calM \times \R^d$. Beginning from a single geometric axiom -- that the token sequence forms a discrete $1$-manifold equipped with a canonical measure lattice -- we translate every core component of the modern Transformer (RMSNorm, RoPE, Softmax Attention, FFN, Residual Stream, SGD, Weight Decay) into a cohesive vocabulary of differential geometry, measure theory, and stochastic calculus. The resulting framework yields quantitative predictions spanning entropic optimal transport (Attention as a Schrödinger bridge) and non-equilibrium thermodynamics (SGD as Itô diffusion violating detailed balance). We conduct a six-part experimental campaign across five architectures (Qwen3, LLaMA\nobreakdash-3.1, Gemma\nobreakdash-3, GPT-2, Mistral) spanning $124$M to $8$B parameters. The empirical observables are quantitatively consistent with the geometric predictions: the $ε^{-1/2}$ Lipschitz scaling calibration at machine precision ($R^2 = 1.000$), the Lie--Trotter operator-splitting torsion, the symmetric ablation instability confirming the Dual-Law of Topological Stability, the $\calO(1/\sqrt{k})$ thermodynamic suppression of Poincaré recurrence on the RoPE torus, the thermodynamic context-limit phase transition, and the Non-Equilibrium Steady State parameter vortex -- verified across two optimizers (AdamW and Pure SGD) to exclude momentum artifacts. The results demonstrate that analyzing Transformers through the lens of continuous stochastic differential geometry provides a predictive descriptive vocabulary for the stability limits, context bounds, and optimization dynamics of Large Language Models.