Deep Spectral Learning of Embedded Latent Transfer Operators for Stochastic Dynamical Systems

Can nonlinear dynamical systems be learned through a compact linear state-space representation, without directly solving a non-convex system-identification problem? We give a provable pipeline for doing so. Starting from observations of an unknown nonlinear dynamical system, we first learn an implicit spectral predictor using Observation Spectral Filtering (OSF), a convex method that competes with the best linear observer for the system. We then apply spectral-to-LDS distillation to convert this predictor into an explicit recurrent linear dynamical system. Our main theorem shows that the average prediction error of the distilled LDS decomposes into an exponentially-small distillation term and the OSF learning term governed by the Luenberger complexity of the best observer. The guarantee is dimension-free: it depends on observer complexity rather than on the latent dimension needed to represent the nonlinear system. To our knowledge, this yields the first end-to-end provable method for extracting a best-in-hindsight LDS representation of nonlinear dynamics through convex learning followed by provable distillation. Experiments on linear LDS benchmarks and MuJoCo behavior cloning show that the train-then-distill pipeline produces compact LDS predictors that match or outperform directly trained baselines.

Koopman theory turns nonlinear dynamics into a linear spectral problem. In computation, however, everything depends on a hard finite-dimensional choice: the observables must be expressive, nearly invariant under the dynamics, and, ideally, compatible with composition. Deep Koopman methods learn flexible coordinates, whereas structure-preserving methods enforce operator identities on fixed dictionaries. We combine these ideas by introducing Deep Embedded Multiplicative Dynamic Mode Decomposition (DeepMDMD), a method that learns a latent space and a partition of it, while enforcing the Koopman product rule as an exact algebraic constraint. Training alternates between an exact multiplicative operator update and a differentiable latent-clustering step that promotes Koopman closure. The result is a finite transition map on learned latent cells. Its nonzero spectrum lies on the unit circle, its dictionary is shaped by the dynamics rather than by ambient geometry, and forecasts are made in latent coordinates before being decoded to physical space. Across Hamiltonian, chaotic, and fluid examples, DeepMDMD learns dictionaries that are far more compact and dynamically coherent than those produced by geometric MDMD partitions. It reduces spectral pollution, reveals richer continuous-spectrum structure, and gives stable forecasts under severe noise. In high-dimensional flows, including a 158,624-dimensional cylinder wake and a noisy $Re=20,000$ lid-driven cavity, it preserves coherent structures and long-time spectral statistics where state-space MDMD fails. These results suggest a practical rule for Koopman learning: learn the coordinates, constrain the algebra.

Highly nonlinear chaotic dynamical systems remain difficult to model due to fundamental trade-offs between complexity, expressivity, and data efficiency. Modern machine learning methods achieve strong predictive performance but often rely on a-priori system knowledge or curated data with limited interpretability. Koopman operator theory offers a promising direction via linear representation in an infinite-dimensional observable space. However, many data-driven Koopman methods seek globally valid operators for which useful finite-dimensional spectral embeddings remain difficult to identify under these constraints. To overcome associated limitations, we introduce Fuzzy Spectral Region Decomposition (fSRD), a fully automated learning framework for estimating finite Koopman representation via multiple operators. The proposed method realizes a data-adaptive framework for assembling locally invariant embeddings, termed Invariant Decomposition. fSRD achieves highly accurate linear reconstructions of nonlinear systems while learning finite-dimensional representations of their induced evolution operators, bridging interpretable operator-theoretic models with expressive data-driven sequence learning. These embeddings are adaptively constructed via a global fuzzy tree model, drawing inspiration from fuzzy neural architectures to learn the induced dynamics while prioritizing parsimonious solutions. Empirical results across canonical chaotic systems (e.g., Lorenz and Duffing) and high-dimensional real-world data demonstrate strong predictive accuracy, interpretability, and robust expressivity across data-rich and data-limited regimes, highlighting the method's generality.