Rethinking Global Average Pooling: Your Classifier Is Secretly a Multi-Instance Learner

Multiple instance learning (MIL) is the standard approach for whole-slide image (WSI) classification and survival prediction, where attention-based models ag gregate patch features into slide-level predictions. These models treat attention weights as evidence for their predictions, but attention is optimized for classi fication, not for identifying which patches actually support the diagnosis. This conflation leads to three failures: selected patches are insufficient (keeping them alone drops Macro-F1 by 0.078), unnecessary (removing them barely changes the prediction), and unrecoverable (continuous attention scores disagree with discrete patch subsets used at inference). The central premise is that evidence quality should be optimized directly through explicit criteria- Sufficiency, Necessity, and Recov erability (S/N/R)- rather than inherited as a byproduct of classification. GCE-MIL is a backbone-agnostic wrapper implemented through three injection modes and three evidence components: a grounding mechanism that aligns selection with domain-specific concepts, noisy-OR coverage that acts as a differentiable proxy for interventional evidence search, and threshold-plus-repair recovery that converts continuous selectors into discrete subsets through marginal-guided repair. Across 9 backbones and 9 datasets (81 configurations), GCE-MIL improves average Macro-F1 by 0.024 and C-index by 0.014, reduces the continuous-discrete gap by 4-7, and increases complement degradation by 2-4. With optional tile prefiltering after discrete recovery, inference runs up to 5 faster while retaining 0.989 full-bag utility.

The Average Gradient Outer Product (AGOP) governs feature learning in neural networks: the Neural Feature Ansatz states that weight Gram matrices at each layer align with the corresponding AGOP matrices computed over the training distribution. We ask a complementary question: can this same quantity serve as a post-hoc attribution method for explaining individual predictions? We introduce AGOP-Weighted: a novel attribution method that multiplies the per-sample gradient by sqrt(diag(M) / max diag(M)), a training-distribution prior that suppresses gradient noise and amplifies consistently important pixels -- a combination not present in any prior attribution method. We formalise two companion variants -- AGOP-Local (per-sample gradient, equivalent to VanillaGrad) and AGOP-Global (diag(M) directly as a zero-cost saliency map) -- and implement an efficient training-time accumulation hook; AGOP-Global then requires zero inference cost (disk lookup) while AGOP-Weighted requires only a single gradient pass. We conduct the first rigorous comparison of AGOP attribution against Integrated Gradients (IG), SmoothGrad, GradCAM, and VanillaGrad across two benchmarks with pixel-level ground truth: (i) the synthetic XAI-TRIS benchmark (four classification scenarios, 8x8 images, CNN8by8) and (ii) the photorealistic CLEVR-XAI benchmark (ResNet-18 fine-tuned from ImageNet). AGOP-Weighted achieves 44% higher mIoU than IG on linear tasks; AGOP-Global achieves 7x higher mIoU than IG on multiplicative tasks (where IG falls below random) at zero inference cost. Both findings generalise to ResNet-18 on CLEVR-XAI (+18% and +37% respectively). We further show that GradCAM fails on small-resolution images due to spatial resolution collapse, and that diag(M) quality improves monotonically throughout training even after classification accuracy has plateaued.

Vision-Language Models such as CLIP exhibit strong zero-shot recognition capability by aligning images with textual concepts, yet they often underperform on multi-label recognition where multiple objects co-exist. A key bottleneck is that the [CLS] token, as a single global visual representation, is insufficient to faithfully encode diverse targets with varying scales, contexts, and co-occurrence patterns. To address this limitation, we present a new multi-label image recognition framework, termed PIAA, which formulates prediction as Patch-level Inference followed by Adaptive Aggregation. Specifically, we first enhance patch-wise predictions from two complementary perspectives: (i) mitigating semantic entanglement in the visual encoder to obtain more discriminative patch representations, and (ii) learning an unsupervised visual classifier to narrow the vision-language modality gap. We then introduce an adaptive aggregation module that consolidates patch-level scores into the final multi-label prediction. Notably, the entire pipeline is fully training-free, requiring no gradient updates or parameter fine-tuning. Experiments show that our method achieves strong improvements with minimal extra computation, exceeding a 6% mAP gain on the challenging NUS-WIDE benchmark over representative baselines. Code is available at https://github.com/akang-wang/PIAA.