cs.CLApr 24, 2026

Ensembles of Large Language Models for Identifying EQ-5D Studies in PubMed Based on Their Abstracts

Authors: Zhyar Rzgar K. RostamMárta PéntekJános Tibor CzereZsombor ZrubkaLászló GulácsiGábor Kertész

Organizations: Doctoral School of Applied Informatics and Applied Mathematics, Obuda University, Budapest, Hungary · John von Neumann Faculty of Informatics, Obuda University, Budapest, Hungary · HECON Health Economics Research Center, University Research and Innovation Center, Obuda University, Budapest, Hungary · Doctoral School of Innovation Management, Obuda University, Budapest, Hungary · PSI CRO Hungary LLC, Budapest, Hungary · Laboratory of Parallel and Distributed Systems, Institute for Computer Science and Control (SZTAKI), Hungarian Research Network (HUN-REN), Budapest, Hungary

Abstract

The rapid increase in scientific publications leads to the fact that manual study screening in systematic literature reviews (SLRs) is increasingly resource consuming, inefficient, and inconsistent. Classifying studies that clearly report health-related quality-of-life results, such as EQ-5D data, requires a high level of clinical interpretation and poses challenges for human reviewers. This study investigates the use of Google's Gemini and Gemma large language models (LLMs) in automating EQ-5D detection in the PubMed biomedical database based only on published abstracts. A multi-phase framework is proposed that integrates few-shot prompting, weight ensembling aggregation, and a soft stacking meta-classifier. Nine LLMs are evaluated on a dataset of PubMed studies manually labeled by two experts regarding EQ-5D reporting. The weighted ensemble of gemini-2.5-pro, gemma-3-12b, and gemma-3-27b obtained a 0.74 weighted F1-score and 0.74 accuracy, exceeding individually attained results. The ensembling of top-performing models improved the balance between precision and recall compared to individual models, while the soft stacking approach provided greater reliability and interpretability. Feature analysis shows that the probability results from the models are important in guiding the final predictions. The findings suggest that an ensemble-based LLM setup is a reliable and scalable approach for automating screening in biomedical research.

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