Large language models (LLMs) are increasingly used to communicate and explain scientific concepts, yet their tendency to hallucinate poses significant risks in this high stakes use-case. Prior hallucination evaluation work remains largely restricted to the biomedical domain, treats hallucination as a binary task, and has not examined the growing family of scientifically fine-tuned LLMs. We address these gaps with SciFactCheck, a benchmark of 2,500 prompts across five scientific domains, paired with a modular evaluation framework targeting three factuality hallucination types: unverifiability, overclaim, and attribution. Using a controlled minimal-pairing design, we evaluate 18 LLMs by comparing each scientifically fine-tuned model against its general-purpose base. Our results indicate that 1. Scientifically fine-tuned models exhibit degraded factual reliability across all hallucination types and scientific domains, and 2. Fine-tuned models are internally less confident yet linguistically more assertive. A human pilot study further reveals that current fact-checking tools show only modest agreement with expert judgments on scientific content, and that defining scientifically check-worthy claims remains contested even among human annotators. Our findings fundamentally challenge current methods of domain-specific fine-tuning for factuality and call for developing improved verification infrastructure for scientific content.
Large language model (LLM) agents are increasingly deployed in scientific research, where reliability is critical and the underlying knowledge is densely interconnected. In such settings, hallucinations are particularly damaging: a single erroneous claim on a foundational concept can propagate through multi-step reasoning and corrupt entire trajectories. Existing hallucination benchmarks largely operate at the surface level, treating facts in isolation and relying on uniform accuracy metrics that ignore this topological structure. We address this gap with SCHEMA, the first evidence-grounded, topology-aware evaluation framework for hallucinations in scientific agents. SCHEMA automatically constructs scientific concept graphs from benchmark seeds and literature evidence, synthesizes graph-grounded tasks spanning claim verification, multi-hop reasoning, open-ended explanation, and experimental code generation, and evaluates agents with two complementary diagnostics. A trajectory hallucination pipeline audits intermediate reasoning at scale via a topology-weighted severity score, while a multi-agent counterfactual attribution module pinpoints the causal mechanism behind selected failures. SCHEMA reveals that hallucinations concentrate at a small set of highly connected knowledge hubs, and that final-answer accuracy decouples from trajectory honesty; models often reach correct conclusions through structurally flawed reasoning. These results indicate that for high-stakes scientific applications, terminal accuracy alone is an insufficient signal of agent reliability, motivating mechanism-level evaluation grounded in knowledge topology. Code is available at https://github.com/circles-post/SCHEMA.
Large language models generate fluent text that can contain unfaithful claims -- a phenomenon known as hallucination. We present a multi-signal detection pipeline combining fine-tuned DeBERTa-v3 classification, Monte Carlo (MC) Dropout uncertainty quantification, and temperature-scaled calibration for response-level hallucination detection. Evaluated on the HaluEval benchmark, our pipeline achieves F1=0.915 and AUROC=0.977 on general-domain tasks, with per-task F1 scores of 0.97 (QA), 0.96 (Summarization), and 0.82 (Dialogue). MC Dropout inference further improves accuracy to 93.2%. A context ablation study confirms the model performs genuine entailment reasoning rather than exploiting surface patterns, with summarization F1 dropping 24% when knowledge context is removed. Learning curve analysis reveals that 25% of training data captures 77% of full-data performance. Beyond detection, we apply Direct Preference Optimization (DPO) to a Qwen2.5-0.5B generator, reducing its hallucination rate from 85.5% to 37.7% (55.9% relative reduction) as measured by our detector. Cross-domain evaluation on the SciFact biomedical benchmark shows that general-domain training transfers poorly (F1=0.52), motivating domain-specific fine-tuning. PubMedBERT fine-tuned on SciFact achieves F1=0.63 and AUROC=0.81, demonstrating that domain-matched pre-training is the strongest adaptation strategy. Code and models are available at https://github.com/varunteja99/hallucination-detection-nlp
This paper is accepted and in press for AI and Ethics. This paper includes the supplementary data file at the end of the manuscript. This study examines whether large language models (LLMs) can reliably answer scientific questions and demonstrates how easily they can be influenced by fringe scientific material. The authors modified custom LLMs to prioritise knowledge in selected fringe papers on the Fine Structure Constant and Gravitational Waves, then compared their responses with those of domain experts and standard LLMs. The altered models produced fluent, convincing answers that contradicted scientific consensus and were difficult for non-experts to detect as misleading. The results show that LLMs are vulnerable to manipulation and cannot replace expert judgment, highlighting risks for public understanding of science and the potential spread of misinformation.