Recall Before Rerank: Benchmarking Deep Learning Models for Large-Scale Code-to-Code Retrieval

Code search has usually been evaluated as first-stage retrieval, even though production systems rely on broader pipelines with reranking and developer-style queries. Existing benchmarks also suffer from data contamination, label noise, and degenerate binary relevance. In this paper, we introduce \textsc{CoREB}, a contamination-limited, multitask \underline{co}de \underline{r}etrieval and r\underline{e}ranking \underline{b}enchmark, together with a fine-tuned code reranker, that goes beyond retrieval to cover the full code search pipeline. \textsc{CoREB} is built from counterfactually rewritten LiveCodeBench problems in five programming languages and delivered as timed releases with graded relevance judgments. We benchmark eleven embedding models and five rerankers across three tasks: text-to-code, code-to-text, and code-to-code. Our experiments reveal that: \circone code-specialised embeddings dominate code-to-code retrieval (${\sim}2{\times}$ over general encoders), yet no single model wins all three tasks; \circtwo short keyword queries, the format closest to real developer search, collapse every model to near-zero nDCG@10; \circthree off-the-shelf rerankers are task-asymmetric, with a 12-point swing on code-to-code and no baseline net-positive across all tasks; \circfour our fine-tuned \textsc{CoREB-Reranker} is the first to achieve consistent gains across all three tasks. The data and model are released.

Large language models (LLMs) for code completion and generation are increasingly used in software development, yet they may reproduce training examples verbatim and without authorship attribution, raising legal and ethical concerns around plagiarism and license compliance. Classical fingerprint-based plagiarism detectors based on fingerprinting, such as Winnowing, remain highly effective, yet the inspection requires comparing fragments of code to the entire training set, and their linear-time search makes them impractical for the billion-scale corpora used to train modern code LLMs. To bridge this gap, we introduce SOURCETRACKER, a 300M-parameter encoder tailored for code retrieval, together with a hybrid two-stage provenance-tracking pipeline HYBRIDSOURCETRACKER (HST). HST first narrows down a small set of candidate snippets via vector search, then re-ranks those candidates using Winnowing on exact fingerprints. We train and evaluate our system on a 10M-snippet subset of the THESTACKV2 dataset, with both verbatim and adapted snippets that emulate realistic identifier renaming. On an in vitro 100k-snippet search space with adapted queries, our hybrid approach reaches a mean reciprocal rank on par with Winnowing for 30-token fragments. Then, starting from windows >= 60 tokens, it consistently over-performs by up to 5.4% while preserving logarithmic-time query complexity. In a complementary evaluation using an LLM-based judge, we find that many retrieved snippets not labeled as ground truth are still highly similar to the expected sources, particularly with longer context windows, and thus remain useful for end users. Overall, our results demonstrate that integrating vector search with fingerprinting enables scalable, high-precision provenance tracking for code produced by LLMs.

The extent to which large language models for code rely on memorization over genuine understanding remains highly debated. While current literature frequently reports widespread memorization, evaluating the underlying probing techniques across dense architectures reveals a severe breakdown in their utility at scale. Traditional encoder-style probes using perturbations such as synonym fuzzing or dead-code insertion struggle to expose memorization in scaled models, even on known-contaminated benchmarks, and decoder-style probes that rely on log probabilities show similar performance degradation. The specific mode of failure for these probes, particularly why such techniques disrupt smaller models but fail to impact larger ones, motivates us to untangle representation load from memorization rather than treating them as a single phenomenon. By applying invertible mathematical transforms to numeric problems, we isolate these two factors and reveal that scaled encoders successfully absorb substantial representation load while still converging on the correct family of solutions. In practical software engineering, this ability to adapt to varying surface forms is what truly matters for usability and generalizability in LLM and agentic applications. Whether a specific solution was seen during training becomes a much less pressing question because although memorization inflates scores on contaminated benchmarks, factoring out representation load makes it debatable how much we should truly care if a functional answer was originally memorized. Future evaluations must therefore be built around separating these phenomena rather than relying on methodologies that quietly entangle them.