T3R: Deeper Test-Time Adaptation for Graph Neural Networks via Gradient Rotation
Authors: Huy Truong, Alexander Lazovik, Victoria Degeler
Organizations: Bernoulli Institute, University of Groningen, Groningen, The Netherlands · Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands
Graph Neural Networks (GNNs) deployed in real-world systems typically have fixed weights, often leading to degraded performance under distribution shifts. This issue can be mitigated by conventional fine-tuning, but in many real-world cases, collecting labeled data is expensive or infeasible. A potential approach is Test-Time Training (TTT), which adapts models' weights using unlabeled test data, yet it is typically limited to shallow updates that affect only a subset of model parameters. We propose T3R, leveraging multiple Rotograd matrices to improve task affinity between the target and auxiliary tasks, essential for effective test-time training. T3R further introduces a rotation technique that reorients self-supervised signals using these matrices to create surrogate gradients for the target task, allowing deeper adaptation across nearly the entire architecture. Empirically, T3R reduces MAE by 0.172 points over standard inference in regression datasets and achieves at least 9.37% relative improvement on cross-domain OGB classification benchmarks compared to models without adaptation. These results highlight the potential to develop an adaptation pipeline for graph-based systems, particularly in settings where conventional fine-tuning or retraining is infeasible.
Pre-trained foundation models have demonstrated remarkable success in many domains, enabling a unified backbone to generalize across diverse downstream tasks. However, extending this paradigm to graph learning remains challenging due to the intrinsic mismatch between graph data and fixed architectural designs. In this work, we show that this limitation can be overcome via recurrent graph models. To achieve this, we conduct a systematic theoretical analysis, rigorously deriving step dependence as a necessary and sufficient condition for an adaptively convergent recurrent process. Building on this foundation, we propose AdaR, an Adaptive Recurrent graph model, empowering flexible test-time computing on various downstream tasks without changing model parameters. To enable adaptive inference, AdaR explicitly encodes normalized step information and representation-target relations into the recurrent updates. To ensure convergence of the recurrent process, AdaR employs gradient-based supervision signals that guide representation updates throughout the recurrence. Empirical results demonstrate that AdaR consistently outperforms strong baselines in both inductive and transductive settings.
Test-time adaptation (TTA) addresses distribution shift using only unlabeled test data. Existing methods typically adapt pretrained models by updating their parameters, limiting both what is adapted and where adaptation can occur within the network. We instead keep the pretrained network frozen and steer its intermediate representations. We introduce SPeaR (Steering Primitive for Realigning Representations), which inserts lightweight learnable modules at stage boundaries and optimizes them directly from the test stream, requiring neither source data nor supervised warm-up. Each primitive is optimized using a gated objective that reduces uncertainty only when adaptation is beneficial, along with a diversity regularizer to prevent collapse, and a multi-depth anchor to stabilize adaptation. We show that steering early representations is the most effective strategy, and that the same primitive transfers across convolutional and Transformer architectures. Across CIFAR-10-C, CIFAR-100-C, and ImageNet-C, SPeaR consistently matches or outperforms methods that adapt orders of magnitude more parameters, remains robust across a wide range of batch sizes, and preserves source-domain performance during continual adaptation.
Graph Foundation Models (GFMs), built upon the Pre-training and Adaptation paradigm, have emerged as a research hotspot in graph learning. For GNN-based GFMs, graph prompt tuning has become the prevailing adaptation method for downstream tasks. Although recent methods explain why graph prompt tuning works, how to rigorously measure its adaptation capacity remains an open problem. Addressing this problem is critical for understanding the capability limits of graph prompt tuning and for developing more powerful adaptation methods. In this paper, we propose Prismatic Space Theory (PS-Theory), a novel mathematical framework to quantify the capacity of adaptation methods, while focusing on establishing the upper bound for the adaptation capacity of graph prompt tuning. Building upon the proposed PS-Theory, we further introduce Message Tuning for GFMs (MTG), a lightweight approach that injects a small set of learnable message prototypes into each layer of the GNN backbone to adaptively guide message fusion without updating pre-trained weights. Through our PS-Theory, we prove that the adaptation capacity of MTG can exceed the theoretical upper bound of graph prompt tuning. Extensive experiments demonstrate that MTG consistently outperforms graph prompt baselines across diverse benchmark datasets, providing strong empirical support for our theoretical findings.