Organizations: Department of Landscape Architecture and Rural Systems Engineering, Seoul National University, Seoul, South Korea · Interdisciplinary Program in Landscape Architecture, Seoul National University, South Korea · Integrated Major in Smart City Global Convergence, Seoul National University, Seoul, Republic of Korea · Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
Abstract
The accuracy of existing leaf-wood segmentation methods for tree point clouds varies across forest types and sites. Self-supervised learning (SSL) on point clouds has improved the generalization of deep learning models for forestry point cloud tasks, including biomass regression and individual tree segmentation, but its applicability to leaf-wood segmentation remains untested. In this study, we pretrained Point-M2AE, a widely used SSL architecture for point clouds, on ShapeNet-55 augmented with 2,400 individual tree point clouds. For fine-tuning and inference, we used recursive voxel subdivision to handle the wide variation in point density across inputs, allowing the same model to operate at both individual-tree and plot scales without architecture change. Compared to the model without pretraining, the pretrained model improved wood IoU from 60.5% to 70.0% for needleleaf and from 69.7% to 76.3% for broadleaf trees. On a benchmark spanning four countries across three climatic zones, the pretrained model achieved the smallest cross-site variation and highest overall performance among compared methods (LeWos, CWLS, and PointTransformer). Plot-level segmentation maintained accuracy comparable to individual-tree performance, with mIoU of 84.7% for broadleaf and 77.7% for needleleaf plots, showing that the model generalizes across scales without additional finetuning. As a downstream test in tropical forests, where dense canopies make segmentation challenging, we applied our model and a quantitative structure model to estimate wood volume for 28 trees from Guyana, Indonesia, and Peru to assess whether the segmentation improvements from SSL pretraining translate into improved downstream performance. The resulting volume estimates achieved the lowest error among all methods tested (MAE = 2.40 m3), less than half that of algorithmic baselines (LeWos: 5.94 m3; CWLS: 5.27 m3).
Detailed structural and species information on individual tree level is increasingly important to support precision forestry, biodiversity conservation, and provide reference data for biomass and carbon mapping. Point clouds from airborne and ground-based laser scanning are currently the most suitable data source to rapidly derive such information at scale. Recent advancements in deep learning improved segmenting and classifying individual trees and identifying semantic tree components. However, deep learning models typically require large amounts of annotated training data which limits further improvement. Producing dense, high-quality annotations for 3D point clouds, especially in complex forests, is labor-intensive and challenging to scale. We explore strategies to reduce dependence on large annotated datasets using self-supervised and transfer learning. Our objective is to improve performance across three tasks: instance segmentation, semantic segmentation, and tree classification using realistic and operational training sets. We observe improvements across all tasks, compared to training from scratch, evaluated with their respective metrics. For instance segmentation, self-supervised learning combined with domain adaptation improves AP50 by 16.98%. For semantic segmentation, self-supervised learning alone improves mIoU by 1.79%. For tree classification, hierarchical transfer learning improves mean Jaccard by 6.07%. To simplify use and encourage uptake, we integrated the tasks into a unified framework, streamlining the process from raw point clouds to tree delineation, structural analysis, and species classification. Pretrained models reduce energy consumption and carbon emissions by ~21%. This open-source contribution aims to accelerate operational extraction of individual tree information from laser scanning point clouds to support forestry, biodiversity, and carbon mapping.
Aldino Rizaldy, Fabian Ewald Fassnacht, Ahmed Jamal Afifi +3
Forest inventories increasingly rely on artificial intelligence (AI) models to derive forest attributes from large-scale 3D point clouds. Current models are typically specialized to a single task, sensor, and forest type, making adaptation expensive in terms of annotations, computation, and expertise. We ask whether a single pretrained model can instead learn transferable representations across diverse forest inventory settings. Inspired by recent developments in language modelling and computer vision, we take a step toward a foundation model (FM) for 3D forestry. Using LitePT as backbone, we first establish a strong supervised baseline that sets a new state of the art on forest semantic and instance segmentation, tree species classification, and age regression benchmarks. We then curate a large-scale unlabelled corpus spanning airborne, UAV, and mobile laser scanning across diverse forest ecosystems, and pretrain the same backbone using self-supervised learning. We systematically evaluate representation learning strategies by comparing training from scratch, supervised pretraining, and self-supervised pretraining across four representative forestry tasks, under varying annotation budgets. Compared with training from scratch, self-supervised pretraining accelerates model convergence and consistently improves performance when annotations are scarce. Compared with task-specific supervised pretraining, self-supervised pretraining yields more transferable representations across downstream forestry tasks. These findings identify the practical regime in which pretrained representations are most valuable and suggest that instance discrimination, rather than forest semantics, is the main remaining obstacle to a general-purpose 3D forest foundation model. Code and models are available at: https://github.com/prs-eth/ForPT.
We present SegmentAnyTreeV2, a sensor- and platform-agnostic framework for semantic and instance segmentation of forest point clouds. The model combines a serialization-based Point Transformer v3 backbone with a lightweight semantic head and a tree-focused cross-attention mask decoder. Semantic predictions restrict instance decoding to tree-class voxels, while instance-aware query initialization, one-to-many seed supervision, and asymmetric mask scoring improve separation in dense and structurally complex stands. We further introduce FOR-instance v3, an expanded benchmark comprising 427 scenes and 26,496 annotated trees across diverse biomes, forest structures, and LiDAR platforms. On the FOR-instanceV2 test split, SegmentAnyTreeV2 achieves 90.5% precision, 80.2% recall, 85.0% F1, 90.7% coverage, and 87.6% semantic mIoU, outperforming previous learning-based methods in both instance detection and mask completeness. Zero-shot evaluation on independent sites further demonstrates strong cross-domain generalization.