Logit-Coordinate Generative Models for Mixed Continuous-Categorical Tabular Data
Authors: Yuefei Shen, Xiaotong Shen
Organizations: School of Statistics, University of Minnesota
Abstract
Mixed continuous--categorical data pose a representation problem for continuous generative models. Flow Matching and Gaussian diffusion operate in Euclidean spaces, whereas categorical laws lie on probability simplices and may be highly imbalanced. We study a logit-coordinate framework that encodes categorical variables as smoothed natural parameters and combines them with transformed numerical variables. This yields common formulations of Logit Flow Matching and Logit Diffusion. We introduce a mixed-distribution discrepancy separating categorical marginal error from conditional continuous Wasserstein error, and derive stability bounds and imbalance-aware nonparametric rates linking vector-field or drift error to decoded mixed-distribution error. Controlled simulations show that scaled-logit coordinates improve or match one-hot coordinates, especially under severe rare-cell imbalance. Across four real-data benchmarks and ten splits per dataset, Logit FM improves the primary distributional metrics on three datasets and is comparable on Churn2; Block-Conditional Logit FM consistently improves the flat model; and Logit Diffusion generally improves over or matches One-Hot Diffusion.
Generating mixed-type tabular data requires jointly modeling diverse feature distributions and their complex cross-column dependencies. Variational flow matching handles distinct endpoints via factorized distributions, yet leaves feature-specific processing and cross-column interactions implicit within a shared backbone. We introduce Feature-wise Unified Specialization with cross-column Exchange (FUSE) to explicitly separate these roles. FUSE applies separate adaptive mixture modules to numerical and categorical features, allowing each feature to combine shared specialized subnetworks, while joint attention preserves information exchange across all columns. We also characterize the excess population risk from restricted conditioning contexts and bound the continuous Wasserstein generation error by endpoint-prediction risk. Comprehensive experiments on eight tabular datasets demonstrate that FUSE achieves strong and consistent performance across distributional fidelity and downstream utility metrics.
Flow-based generative modeling in continuous spaces exploit Tweedie's formula to express the denoiser (learned in training) as a score function (used in sampling). In contrast, this relation has been largely missing in the discrete setting where common approaches focus on learning discrete scores and rates. In this work we close this gap for discrete non-negative ordinal data by introducing Binomial flows. Our framework provides a simple recipe for training a discrete diffusion model which simultaneously denoises, samples, and estimates exact likelihoods. We verify our methodology on synthetic examples and obtain competitive results on real-world data sets.
Missing values are ubiquitous in heterogeneous data mining, where numerical, categorical, and binary variables often coexist. Many imputation methods, especially diffusion-based ones, treat discrete variables through continuous surrogates such as one-hot relaxations rather than modeling them natively. This creates a mismatch between the model state space and the mixed discrete and continuous structure of the data. We propose Impute-EM, an Expectation Maximization style framework that alternates between imputing missing entries with the current model and refitting a diffusion backbone on completed data. We instantiate Impute-EM with native mixed-state diffusion backbones for heterogeneous data, combining Gaussian and masked categorical components without one-hot relaxations. In exact settings, we characterize the update and show that the observed mask-indexed marginals match the targets at the limit, while making explicit that the full data distribution is generally non-identifiable from incomplete observations alone. Empirically, Impute-EM delivers the best distributional fidelity on mixed-type tabular imputation, on which downstream modeling relies, with text imputation serving as a controlled validation of the native discrete backbone.
Sergei Kholkin, Kirill Sokolov, Dmitry Baranchuk +2