Safety guards are widely used to filter harmful content and are typically trained via supervised fine-tuning on labeled prompt-response pairs. We audit two widely used safety-guard training datasets, WildGuardMix and GR-Train, and find that among responses to harmful prompts, refusal expressions co-occur almost exclusively with unharmful labels. This imbalance motivates what we term the refusal-cue shortcut: inserting a refusal cue into a harmful response could flip the guard's verdict from harmful to unharmful. The shortcut affects not only guards trained on these datasets but also officially released models such as LlamaGuard3 and Qwen3Guard whose training data is undisclosed. It persists across response positions and is generally stronger in smaller variants within a family. To mitigate it, we adapt sparse complementary masking as a lightweight post-hoc intervention that identifies and suppresses a small set of shortcut-associated attention heads and MLP neurons without retraining. On two primary benchmarks, the intervention achieves an approximately 79% relative reduction in response-initial detection failures induced by refusal cues, while preserving standard detection performance. Although optimized using cues at a single response position, the suppression effect transfers to unseen positions and datasets, suggesting that shortcut manifestations across positions are partly mediated by shared internal components. Further analysis provides evidence that shortcut reliance and legitimate refusal recognition are partially functionally separable, as suppressing the shortcut broadly preserves the guard's ability to recognize genuine refusals.
How do the methods used to train language models to refuse harmful requests shape how that refusal actually works inside the model? We compare three post-training methods - supervised fine-tuning, reasoning-augmented fine-tuning (training on reasoning chains that justify a safety decision), and preference optimization (ORPO) - across three architecturally distinct models (Llama-3.1-8B, Gemma-2-9B, Qwen3-8B). We find that training method, not just data, reshapes how refusal is computed internally: reasoning-augmented training consistently produces a distinct kind of refusal computation, visible across all three models, while architecture independently shapes internal structure and how reliably refusal can be steered. Most importantly, no method we study achieves all three properties we would want from safe alignment at once: refusal that isn't concentrated in a few fragile components, safety gains that don't cost general capability, and safety behavior correctable through small, targeted edits. We caution against treating current post-training methods as a solved, reliable defense, especially for security-critical use. Code and models are available in https://github.com/hoangcuongnguyen2001/Beyond-Shallow-Alignment.
Safety tuning can improve harmful refusal, but models may learn surface-form shortcuts: wrapped harmful prompts bypass safety, while similarly wrapped benign prompts are over-refused. We propose Wrapper-Based Intent-Form Augmentation (WIFA), an automatic intent-group augmentation method that pairs wrapped harmful examples with structurally matched wrapped benign counterexamples, requiring no external teacher or manual per-wrapper intent labels. We use WIFA as a common data layer for two complementary fine-tuning routes: WIFA-Boost, a two-stage high-safety recipe, and Anchored Group-Consistent Refusal Training (A-GCRT), which regularizes refusal/compliance decision scores across same-intent wrappers and anchors harmful and benign groups on opposite sides of a margin. In the Qwen setting, WIFA-Boost reaches the strongest transformed-harmful refusal, while A-GCRT reduces OR-Bench over-refusal from 25.7% for the base model to 17.4%; reproduced baselines do not match these operating points. Llama results and ablations over data structure, two-stage order, and A-GCRT components support this intent-group interpretation without claiming universal below-base over-refusal.
Safety-aligned large language models (LLMs) often generate refusal responses to harmless queries due to the over-refusal problem. However, existing methods for mitigating over-refusal cannot maintain a low refusal ratio for harmless queries while keeping a high refusal ratio for malicious ones. In this paper, we analyze how system prompts with varying safety levels affect LLM refusal behaviors when facing over-refusal queries. A key observation is that, when LLMs suffer from the over-refusal issue, non-refusal tokens remain present in the next-token candidate list, but the model systematically fails to select them, despite the generation of refusal tokens. Based on this observation, we propose a training-free and model-agnostic approach, Adaptive Contrastive Decoding (AdaCD), to mitigate over-refusal while maintaining LLM safety. First, AdaCD compares the output distributions of the LLM with or without an extreme safety system prompt to refine the refusal token distribution. Second, we introduce an adaptive contrastive decoding strategy that dynamically incorporates or removes the refusal token distribution, adaptively boosting the probability of selecting refusal or non-refusal tokens. Experimental results on five benchmark datasets show that, on average, AdaCD reduces the refusal ratio for over-refusal queries by 10.35%, yet still increases the refusal ratio for malicious queries by 0.13%. Code is available at https://github.com/OutdoorManofML/AdaCD.