Hyperbolic Graph Embedders for Link Prediction and Topology Reconstruction

Hyperbolic geometry has emerged as an effective latent space for representing complex networks, owing to its ability to capture hierarchical organization and heterogeneous connectivity patterns using low-dimensional embeddings. As a result, numerous hyperbolic graph representation learning methods have been proposed in recent years. However, their practical adoption and systematic comparison remain challenging, as implementations are fragmented and shared tools for reproducible and fair evaluation are lacking. In this work, we introduce a unified open-source framework for hyperbolic graph representation learning that integrates several widely used embedding methods under a common optimization interface. The novel framework enables consistent training, visualization, and evaluation of hyperbolic embeddings, and interfaces seamlessly with standard network analysis tools. Leveraging this unified setup, we conduct an experimental study of hyperbolic embedding methods on real-world networks, focusing on two canonical downstream tasks: link prediction and node classification. Beyond predictive accuracy, the study offers practical insights into the strengths and limitations of existing approaches, thereby facilitating informed method selection and fostering reproducible research in hyperbolic graph representation learning.

Predicting Internet round-trip time (RTT) is critical for routing optimization, quality-of-service (QoS) provisioning, and traffic engineering, yet remains challenging due to long-term temporal dependencies, evolving routing dynamics, and heavy-tailed latency distributions. While Temporal Graph Neural Networks (TGNNs) can model evolving network topologies, most existing approaches operate in Euclidean space, which poorly captures the hierarchical and scale-free structure of Internet routing graphs. Hyperbolic geometry provides a more suitable representation space. We propose HERMIT (Hyperbolic Edge-aware RTT Modeling via Integrated Topology), a hybrid framework combining a hyperbolic manifold-preserving temporal GNN with a Random Forest regressor for joint link prediction and RTT prediction. Built on HMPTGN, HERMIT introduces RTT-aware edge features and a learnable edge encoder to improve modeling of evolving link states and routing behavior. The resulting hyperbolic node representations are combined with historical RTT statistics for robust latency prediction. We evaluate HERMIT on a large-scale real Internet dataset spanning 2015-2024. HERMIT consistently outperforms a strong Random Forest baseline using only historical RTT statistics, achieving a 6% RMSE improvement while reducing large errors on heavy-tailed samples. It also surpasses prior hyperbolic TGNN models, including HMPTGN and HTGN, in link prediction performance. These results demonstrate that combining hyperbolic temporal graph learning with tree-based regression provides a scalable solution for RTT prediction in real-world Internet topologies.

Dimensionality reduction methods such as UMAP and t-SNE are central tools for visualising high-dimensional data, but their local-neighborhood objectives can preserve sampling noise while distorting global topology. We show that standard local metrics reward this noise memorisation: top-performing embeddings invent cycles and disconnected islands absent from the data. We introduce a topology-faithfulness benchmark based on noisy manifolds with known homology, tune DiRe against it, and find Pareto-optimal configurations that match or beat GPU-accelerated UMAP on classification while recovering exact first Betti numbers on stress tests. On 723K arXiv paper embeddings, DiRe preserves 3-4 times more topological structure than UMAP at comparable wall-clock.