Organizations: Carnegie Mellon University · UC Berkeley · Cornell University
Abstract
Graph neural networks typically propagate information through repeated message-passing layers, coupling the distance over which information travels with the number of nonlinear transformations applied. This coupling can make deep architectures difficult to optimize and can lead to over-smoothing, over-squashing, and the loss of long-range information. Linearized Graph Sequence Models (LGSMs) address this issue by separating information depth from processing depth and treating the successive propagation states of each node as a sequence. However, existing LGSMs construct these sequences using fixed graph operators, limiting their ability to adapt propagation to the input graph, node features, and downstream task. We introduce HOPPER, an end-to-end learnable extension of LGSM that learns how hop sequences should be extracted before they are processed by a modern state-space model. Our framework supports feature-conditioned, structure-aware, graph- and hop-adaptive propagation mechanisms while preserving permutation equivariance. Standard adjacency-based and non-backtracking LGSM sequences arise as special cases of our proposed extractor family. We show that HOPPER is state-of-the-art or competitive across the ECHO-Synth benchmark, and that varying the maximum neighborhood size of message backtracking cancellation (i.e. structural memory window) can optimize accuracy on the LRIM physics-based long-range dependency benchmark. These results demonstrate that learnable sequence extraction provides a flexible and effective approach to long-range graph representation learning.
Message-passing based approaches form the default backbone of most learning architectures on graph-structured data. However, the rapid progress of modern deep learning architectures in other domains, particularly sequence modeling, raises the question of how graph learning can benefit from these advances. We introduce Linearized Graph Sequence Models, a framework that recasts message-passing graph computation from the perspective of sequence modeling to simplify architectural choices. Our approach systematically separates the computational processing depth from the information propagation depth, allowing core graph architectural decisions to be treated as sequence modeling choices. Specifically, we analyze, both empirically and theoretically, what sequence properties make methods effective for learning and preserving the graph inductive bias. In particular, we validate our findings, demonstrating improved performance on long-range information tasks in graphs. Our findings provide a principled way to integrate modern sequence modeling advances into message-passing based graph learning. Beyond this, our work demonstrates how the separation of processing and information depth can recast central architectural questions as input modeling choices.
Continuous-time dynamic graphs (CTDGs) provide a richer framework to capture fine-grained temporal patterns in evolving relational data. Long-range information propagation is a key challenge while learning representations, wherein it is important to retain and update information over long temporal horizons. Existing approaches restrict models to capture one-hop or local temporal neighborhoods and fail to capture multi-hop or global structural patterns. To mitigate this, we derive a parameter-efficient state-space modeling framework for continuous-time dynamic graphs (CTDG-SSM) from first principles. We first introduce continuous-time Topology-Aware higher order polynomial projection operator (CTT-HiPPO), a novel memory-based reformulation of HiPPO to jointly encode temporal dynamics and graph structure. The solution from CTT-HiPPO is obtained by projecting the classical HiPPO solution through a polynomial of the Laplacian matrix, yielding topology-aware memory updates that admit an equivalent state-space formulation for CTDGs (CTDG-SSM). Then a computationally efficient discrete formulation is obtained using the zero-order hold approach for model implementation. Across benchmarks on dynamic link prediction, dynamic node classification, and sequence classification, CTDG-SSM achieves state-of-the-art performance. Notably, it achieves large performance gains on datasets that require long range temporal (LRT) and spatial reasoning.
Graph Neural Networks (GNNs) and Graph Transformers (GTs) are now a fundamental paradigm for graph learning, combining the representation-learning capabilities of deep models with the sample efficiency induced by their inductive biases. Despite their effectiveness, a large body of work has shown that these models still face fundamental limitations in tasks that require capturing correlations between distant regions of a graph. To address this issue, we introduce Graph Hierarchical Recurrence (GHR), a novel framework that operates jointly on the input graph and on a hierarchical abstraction obtained through pooling. We also show that the limitations of existing models are even more pronounced in out-of-range generalization, where test instances involve interactions over distances longer than those observed during training. By contrast, despite its simple design, GHR provides three key advantages: strong performance on long-range dependencies, improved out-of-range generalization, and high parameter efficiency. To corroborate these claims, we show that across a broad set of long-range benchmarks, GHR consistently outperforms existing graph models while using as little as 1% of the parameters of current state-of-the-art models. These results suggest a complementary direction to the current trend of scaling architectures to obtain graph foundation models, indicating that increased model capacity alone may not be sufficient for generalization.