A Bayes-Markov Neuromorphic Model of Cortical Orientation Selectivity: A Computational Re-implementation and Quantitative Simulation Study

A central question in computational neuroscience is whether the learning rule used to train a neural network determines how well its internal representations align with those of the human visual cortex. We present a systematic comparison of four learning rules (backpropagation (BP), feedback alignment (FA), predictive coding (PC), and spike-timing-dependent plasticity (STDP)) applied to identical convolutional architectures and evaluated against human fMRI data from the THINGS-fMRI dataset (720 stimuli, 3 subjects) using Representational Similarity Analysis (RSA). All models process stimuli at 224 x 224 resolution; results are averaged across 5 random seeds. Crucially, we include an untrained random-weights baseline that reveals the dominant role of architecture. At V1/V2, the untrained baseline exceeds backpropagation (rho = 0.076 vs. rho = 0.034; Delta-rho = +0.044, p < 0.001), and STDP achieves the highest V1 alignment among trained rules (rho = 0.064). At LOC, only BP reliably exceeds the random baseline (rho = 0.012 vs. -0.005, p < 0.001). At IT, all five conditions converge (rho = 0.008-0.014) with no significant pairwise differences among trained rules (p > 0.05, FDR-corrected). FA consistently produces the lowest alignment at V1, V2, and LOC (rho = 0.012 at V1, below all other conditions). Partial RSA confirms all effects survive pixel-similarity control. Seed variability is small relative to between-rule differences at V1/V2. These results demonstrate that early visual alignment is architecture-driven, learning rules differentiate only at intermediate areas, and all rules converge at the highest levels of the hierarchy.

Nearby neurons in cortex share similar response profiles, producing systematic spatial organization across sensory and cognitive systems. Recent topographic models reproduce aspects of this structure but remain unimodal and spatially constrain each layer separately, yielding fragmented maps that capture neither the contiguity of cortical processing streams nor their integration across modalities. We introduce Topo-Omni, a topographic multimodal model in which visual, auditory, and language/cognitive processing share a single contiguous in-silico sheet. Built by fine-tuning a pretrained foundation model with a spatial smoothness objective, this architecture develops clusters across modalities that are consistent with human neuroimaging, from sensory to cognitive systems. Driving or suppressing a cluster selectively biases or impairs perception, paralleling human intervention studies. Finally, we use our model to screen for novel clusters in-silico and discover new natural landscape and animal networks which we validate in human data. A single spatial principle thus organizes representations across modalities and processing stages, yielding testable hypotheses about cortical organization.

Vision transformers (ViTs) have become the de facto standard for image encoding across many perception tasks. Despite their empirical success, it remains mechanistically unclear how they encode low-level features, given their lack of inductive biases: ViTs process information globally rather than relying on local structure. Biological visual systems, in contrast, build low-level features, such as orientation selectivity in the primary visual cortex, by combining information from small, localized regions of the visual field. These features are general-purpose representations, shared and required across multiple specialized neural pathways, unlike higher-level, task-specific semantic features. This raises the question if such biologically-grounded features arise in ViTs. In this work, we systematically study how orientation selectivity emerges in ViTs by introducing a suite of neuroscience-inspired metrics: representational similarity score (RSS), orientation recruitment score (ORS), and orientation tuning bandwidth to quantify how orientation is encoded in representational geometry and as a function of model depth. Through extensive analysis, we find that: (1) the training paradigm is the strongest determinant of orientation selectivity, with models sharing an objective, peaking at comparable relative depths regardless of scale (2) many units are orientation-selective early in training, with early-to-middle layers recruiting more such units over time, while deeper layers lose selectivity and broaden their tuning toward semantic encoding and (3) our metrics offer a mechanistic heuristic for how many layers to unfreeze for best downstream generalization. Our framework presents a way to track biologically-grounded features during ViT training, probes how desired properties are encoded in transformer representations, and builds a systematic understanding of how ViTs generalize across tasks.