Noesis: Bidirectional Graph-RAG with Adaptive Parallelism and Cross-Knowledge-Base Semantic Discovery

Graph retrieval-augmented generation (GraphRAG) enhances large language models with structured knowledge, yet existing systems construct knowledge graphs in a single extraction pass, producing noisy entities and brittle retrieval. RAGU, an open-source modular GraphRAG engine, addresses this by separating extraction from consolidation: entities and relations pass through two-stage typed extraction, DBSCAN-backed deduplication, LLM summarization, and Leiden community detection. A key insight motivates a compact extractor: the skills an in-pipeline LLM needs - comprehension, extraction, reasoning over context - are language skills that grow only weakly with model size, unlike factual world knowledge. Accordingly, we train Meno-Lite-0.1, a 7B model optimized for language skills, which outperforms Qwen2.5-32B on knowledge-graph construction (+12.5% relative harmonic mean) and matches it on English GraphRAG tasks. On GraphRAG-Bench (Medical), RAGU retrieves the most complete context at every factoid level (evidence recall up to 0.84 vs. $\leq$0.76) and overtakes HippoRAG2 on synthesis tasks; on multi-hop factoid QA, the apparent HippoRAG2 advantage is shown to be largely an answer-format artifact. RAGU is installable via \texttt{pip install graph_ragu}, runs on a single GPU, and is released under MIT. The source code is publicly available at https://github.com/RaguTeam/RAGU, and the Meno-Lite-0.1 model can be obtained from https://huggingface.co/bond005/meno-lite-0.1.

Language model agents reason from scratch on every query, discarding their chain of thought after each run. The result is lower accuracy and high run-to-run variance. We introduce reasoning graphs, which persist the per-evidence chain of thought as structured edges. Unlike prior memory that retrieves distilled strategies by query similarity, reasoning graphs enable evidence-centric feedback: for every candidate item, the system traverses all incoming evaluation edges across prior runs to surface how that specific item has been judged before. We further introduce retrieval graphs, which feed a planner that prunes consistently-rejected candidates over successive runs. Together they form a ROZA graph: a self-improving feedback loop in which accuracy gains scale with gold-passage reuse (reasoning graph) and efficiency gains scale with candidate-pool overlap (retrieval graph). The base model remains frozen; all gains come from context engineering via graph traversal. We evaluate on MuSiQue and HotpotQA, plus a high-reuse deployment subset. Four findings stand out. (1) Dose-response: accuracy improves monotonically with evidence-profile coverage, reaching +10.6pp over Vanilla RAG at 50%+ coverage on the same questions (47% error reduction, $p<0.0001$; per-question Spearman $ρ=+0.144$, $p<10^{-6}$, $n=1{,}100$). (2) Multi-hop scaling: 4-hop accuracy improves by +11.0pp ($p=0.0001$). (3) Cross-cluster prediction: the cluster-level gain is predicted by gold-passage reuse density ($r=0.604$, $p=0.001$, $n=26$ clusters). (4) High-reuse Pareto dominance: highest or tied-for-highest accuracy alongside 46% lower cost and 46% lower latency. Per-passage decision consistency across repeated runs ($N=73$ paired probes, $K=10$ runs each, two model families, three temperatures) rises by +8 to +13pp on a fixed 20-passage context and by +12 to +21pp when the retrieval graph also prunes (all $p<0.005$).

Retrieval-augmented generation (RAG) over knowledge graphs requires retrievers that can effectively capture both graph structure and semantic information. Recent approaches have explored graph neural network (GNN)-based retrievers to model graph topology in multi-hop reasoning tasks. In parallel, graph language models (GLMs) have emerged as a promising paradigm that integrates graph reasoning and the semantic capabilities of language models. In this work, we introduce a GLM-based retriever and investigate the comparative strengths of GLM-based, GNN-based, and traditional vector-search-based retrievers in single- and multi-hop RAG settings, and with a particular focus on transferability to unseen domains. Our findings suggest that finetuned GLM retrievers generalize better out of domain, achieving SOTA on two multi-hop benchmarks. On in-domain multi-hop QA datasets they remain comparable to prior work, with promising scaling as parameters and subgraph coverage increase. GNN-based retrievers achieve higher graph coverage with an efficient training setup, whereas the vector-search baseline excels at single-hop datasets.