AT-ViT: Area-Targeted Multi-View Vision Transformer with Cross-Attention and Multi-Scale Patching for Plant Trait Recognition in Herbarium Images

This paper describes DS@GT ARC's third-place solution to the PlantCLEF 2026 challenge on multi-species plant identification in vegetation quadrat images, where systems must predict every species present in high-resolution (~3000 x 3000 pixel) plot photographs while training only on single-label images of individual plants. The pipeline is built around a fine-tuned DINOv2 ViT-L/14 classifier applied over a multi-scale tile decomposition of each quadrat, with per-tile predictions blended with a FAISS kNN retriever and post-processed by source-aware temporal fusion across repeated plot visits, a habitat-fit demotion that injects geographic and altitude priors from the training data, and a South-Western Europe geographic mask. Habitat-fit demotion and multi-scale aggregation are the largest individual contributors in the ablations. Two complementary training-centric directions, a cross-region transformer with noisy-student distillation on the LUCAS dataset and a label-as-query transformer decoder over synthetic CLS-domain pseudo-quadrats, yielded null results. An inference-time augmentation with instance-aware segmentation crops also did not improve performance. The selected submission reaches a private-leaderboard macro-F1 of 0.43902 (third place; public 0.51096); an unselected configuration of the same pipeline scored above 0.45 on the private set. Code: https://github.com/dsgt-arc/plantclef-2026.

The use of accurate vision models for crop monitoring, disease diagnosis, and plant phenotyping in agriculture is hindered by the lack of expertly annotated data, especially in developing countries. We propose A100, an agricultural vision foundation model that is pre-trained using self-supervised learning on 3 million unlabeled images from fields covering more than 100 crop species. A100 uses a hybrid CNN-Transformer backbone that fuses MBConv stages for local feature extraction with Transformer stages for global contextual representation. A100 uses pre-training with the integration of DINO self-distillation, iBOT masked patch reconstruction, and KoLeo uniformity regularization, resulting in features that are better than ImageNet-12K supervised representations for agricultural applications without any fine-tuning. By utilizing a frozen backbone, the accuracy for crop classification of A100 is 95.37%, which is +2.56% better than ImageNet-12K, and reduces the leaf count error by 10.4% on the GroMo25 phenotyping benchmark, proving that the same backbone can be used for classification and regression tasks. After full fine-tuning, the performance of A100 is 99.90% on 32-class crop identification and 99.02% on 44-class disease detection. On the difficult PlantDoc dataset, A100 outperforms all baselines, such as CvT-13 (64.89% against 63.56%). Remarkably, A100 obtains 98.01% accuracy on plant classification using just 1% of the labelled data (about 284 images per category), showing great label efficiency for use cases with limited labeling. Under an identical protocol, A100 also outperforms the publicly released agricultural foundation models FoMo4Wheat and LeafVision by more than 14 points at 1% labels. We plan to publicly release our pretrained model to allow agricultural professionals to adapt A100 for various plant analysis applications using limited annotations.

Vision-based wheat phenotyping requires repeated measurements under deployment constraints, from growth-stage recognition to wheat-head counting and organ segmentation. Plain Vision Transformers (ViTs) provide a common architecture for these tasks, but quadratic attention limits high-throughput and edge inference. Training-free token merging is attractive because it can be inserted into trained models without retraining. We provide a systematic benchmark of ToMe and Mutual Pair Merging across growth-stage classification, wheat-head detection, and wheat-organ segmentation, measuring task quality, throughput, token count, and peak GPU memory, with additional Raspberry Pi 5 measurements. The benchmark reveals a clear hierarchy: classification is highly merge-tolerant, while detection and segmentation are constrained by repeated instances, thin organs, dense boundaries, reconstruction, and runtime overhead. Optimized attention backends can erase apparent speedups, so deployment value must be profiled on the target runtime rather than inferred from token count.