We propose a scalable, validity-oriented pipeline for evaluating biomedical LLM judges when high-quality human judgments are scarce. First, we augment existing human-labelled biomedical benchmarks with deterministic, metric-grounded mutations that produce auditable preference pairs. Second, we evaluate judges beyond aggregate correctness using three deployment-relevant dimensions: correctness against metric-derived gold labels, robustness under repeated stochastic sampling, and compliance with the requested output format. We use this pipeline to assess Llama-3.1-8B-Instruct under four regimes: (1) base, using the instruct model as is; (2) SFT, distillation-based supervised fine-tuning only; (3) RL, GRPO-based reinforcement learning only; and (4) SFT→RL, SFT followed by RL. The base and single-stage regimes struggle on structured medical discrimination such as PICO extraction and clinical calculations, whereas SFT→RL performs best across correctness, compliance, and robustness; gains concentrate on decomposable tasks (PICO, MedCalc), at times matching or outperforming frontier models.
Figures & tables
Figure 1: Response rates (correct, invalid, and incorrect) by dataset . Each dataset compares base, tuned, and frontier judge models ( n in legend). Variance whiskers show robustness of correct response rate (Eq. ( 6 )). Exact values in Appendix C .
Figure 2: Response rates (correct, invalid, and incorrect) by rank-gap difficulty . Decomposable items only (PICO + MedCalc), stratified by Hard , Medium , and Easy tertiles of δ per source example (hard = smallest gaps; n in legend). Variance whiskers show robustness of correct response rate (Eq. ( 6 )). Exact values in Appendix C .
Appendix figures & tables5 assets
Supplementary material from the paper’s appendix.
Appendix
Suite
Type
y
o
m
sk
PICO
Decomposable
Span sets (P/I/C/O)
Add/delete spans
macro-F1 exact
[0,1]↑
MedCalc
Decomposable
Scalar (clearance)
Perturb formula inputs
MSE
≥0↓
QA tasks
Atomic
Multiple-choice label
Swap wrong option
boolean
{0,1}
Appendix
Table 1: Task-specific operators, metrics, and ground-truth types (Algorithms 1 and 2). MedQA and PubMedQA use the same atomic row as MedBullets.
base
SFT
RL
SFT → RL
O4-mini
GPT-5
Opus 4.6
Decomposable ( n=1026 )
0.75
0.79* (+0.04)
0.67* ( − 0.08)
0.84* (+0.09)
0.82
0.87
0.86
PICO ( n=187 )
0.84
0.88 (+0.04)
0.78 ( − 0.06)
0.94* (+0.10)
0.86
0.94
0.94
MedCalc ( n=839 )
0.65
0.71* (+0.06)
0.57* ( − 0.08)
0.75* (+0.10)
0.79
0.80
0.79
Atomic ( n=2081 )
0.76
0.79* (+0.03)
0.69* ( − 0.07)
0.78 (+0.02)
0.91
0.91
0.91
MedBullets ( n=308 )
0.69
0.72 (+0.03)
0.63* ( − 0.06)
0.73 (+0.04)
0.94
0.93
0.94
MedQA ( n=1273 )
0.79
0.82* (+0.03)
0.71* ( − 0.08)
0.78 ( − 0.01)
0.96
0.97
0.96
Appendix
Table 2: Pairwise judging correctness with rows labeled Decomposable and Atomic as unweighted family means, indented rows as individual benchmarks, Avg as the unweighted mean across all five suites, Bold as best-in-class among Llama-8B or frontier columns, underlined bold as overall row best, and asterisk as McNemar significance [ 20 ] vs. baseline ( p<0.05 ).
base
SFT
RL
SFT → RL
O4-mini
GPT-5
Opus 4.6
PICO ( n=187 )
0.14
0.06 ( − 0.08)
0.03 ( − 0.11)
0.06 ( − 0.08)
0.09
0.03
0.02
MedCalc ( n=839 )
0.07
0.05 ( − 0.02)
0.03 ( − 0.04)
0.02 ( − 0.05)
0.10
0.01
0.02
MedBullets ( n=308 )
0.05
0.04 ( − 0.01)
0.06 (+0.01)
0.07 (+0.02)
0.11
0.01
0.01
MedQA ( n=1273 )
0.04
0.09 (+0.05)
0.09 (+0.05)
0.04 (+0.00)
0.07
0.01
0.00
PubMedQA ( n=500 )
0.08
0.06 ( − 0.03)
0.11 (+0.03)
0.06 ( − 0.02)
0.03
0.01
0.00
Avg
0.08
0.06 ( − 0.02)
0.07 ( − 0.01)
0.05 ( − 0.03)
0.08
0.01
0.01
Appendix
Table 3: Verdict variance is the mean ∣high−low∣ across datasets over majority-vote and any-/all-sample correctness rates (lower is better), with the same columns and formatting as Table 2 .
base
SFT
RL
SFT → RL
O4-mini
GPT-5
Opus 4.6
PICO ( n=187 )
0.0%
4.5% (+4.5)
0.0% (+0.0)
0.0% (+0.0)
3.7%
0.0%
0.0%
MedCalc ( n=839 )
5.5%
6.5% (+1.0)
4.7% ( − 0.8)
4.2% ( − 1.3)
0.0%
0.0%
0.0%
MedBullets ( n=308 )
1.1%
0.0% ( − 1.1)
4.3% (+3.2)
0.0% ( − 1.1)
0.0%
0.0%
0.0%
MedQA ( n=1273 )
0.4%
0.9% (+0.5)
3.8% (+3.4)
0.7% (+0.3)
12.8%
0.0%
0.0%
PubMedQA ( n=500 )
0.0%
0.0% (+0.0)
0.0% (+0.0)
0.0% (+0.0)
1.2%
0.0%
0.0%
Avg
2.3%
2.8% (+0.5)
3.6% (+1.3)
1.6% ( − 0.7)
2.2%
0.0%
0.0%
Appendix
Table 4: Invalid-response share is invalid / (invalid + legitimate errors), lower is better, with the same columns and formatting as Table 2 .
base
SFT
RL
SFT → RL
O4-mini
GPT-5
Opus 4.6
Hard ( n=439 )
0.62
0.65 (+0.03)
0.54* ( − 0.08)
0.69* (+0.07)
0.69
0.72
0.72
Medium ( n=440 )
0.72
0.79* (+0.07)
0.63* ( − 0.09)
0.83* (+0.11)
0.86
0.88
0.87
Easy ( n=147 )
0.79
0.86 (+0.07)
0.72 ( − 0.07)
0.90* (+0.11)
0.94
0.94
0.95
Appendix
Table 5: Rank-gap difficulty on decomposable items (PICO + MedCalc), where Hard / Medium / Easy are three tertiles of δ per source example with boundaries over [1,K−1] that depend on that example’s candidate count K (hard = smallest gaps), not fixed absolute integers across tasks, using the same columns and formatting as Table 2 .
Large language model (LLM)-as-a-judge research uses language models to score, compare, and verify AI outputs as scalable alternatives to human evaluation.
LLM-as-a-Judge frameworks are increasingly trusted to automate evaluation in place of human experts, yet their reliability in high-stakes medical contexts remains unproven. We stress-test this assumption for detecting incomplete patient-facing medical responses, evaluating three rubric granularities (General-Likert, Analytical-Rubric, Dynamic-Checklist) and three backbone models across two clinician-annotated datasets, including HealthBench, the largest publicly available benchmark for medical response evaluation. LLM Judges discriminate complete from incomplete responses at and slightly above near chance (AUC 0.49--0.66); at the threshold required to recall 90% of incomplete responses, clinicians must still review the vast majority of the dataset, offering no triage utility. Even when model and clinician verdicts agree, they rarely cite the same explanation; and when they diverge, false positives stem from over-flagging non-essential gaps while false negatives reflect outright detection failures. These results reveal that LLM Judges and clinicians apply fundamentally different completeness standards; a finding that undermines their use as autonomous evaluators or triage filters in clinical settings.
Alexandra DeLucia, Heyuan Huang, Sonal Joshi +3
Data Science and AI Institute, Johns Hopkins University
Large language models (LLMs) in medicine are mainly evaluated using multiple-choice question answering (MCQA), which can overestimate real clinical ability due to guessing strategies and answer biases. To address these limitations, we introduce an expanded and more challenging benchmark based on Polish medical exams, adding over 15,000 questions, two new domains, and four structural modifications that reduce MCQA-specific artifacts and better test reasoning. We evaluate 21 LLMs and show that evaluation design strongly affects results. Under our harder setup, the best model (Qwen3.5-122B) drops by 28.4 and 31 pp on English and Polish exams, respectively. Despite low evidence of data contamination, standard MCQA scores do not reliably reflect true medical competence. To facilitate further research, we make our benchmark publicly available.
Antoni Lasik, Jakub Pokrywka, Łukasz Grzybowski +7
NASK National Research Institute · Adam Mickiewicz University · ARAAI Poland +4
LLM-as-a-judge has become the de facto standard for scalable, subjective evaluation, yet current leaderboards compensate for systematic measurement bias by running ever more comparisons, an approach that is both statistically unsound and computationally wasteful. The root cause is an incomplete measurement model, treating LLM judges as neutral, interchangeable instruments ignores documented biases like position bias, verbosity bias, judge severity, and self-enhancement, that no volume of additional data can eliminate. We propose a unified latent variable framework that jointly models pairwise and ordinal data while explicitly correcting for these confounders, recovering reliable rankings from substantially fewer comparisons. Because fitting this model costs negligible compute relative to a single round of LLM inference, bias correction is not only more statistically rigorous but also a more sustainable approach to trustworthy evaluation.
Harshita Katoch, David Antony Selby, Gerrit Großmann +1
Department of Computer Science, University of Kaiserslautern–Landau (RPTU), Germany · Data Science and its Applications, German Research Centre for Artificial Intelligence (DFKI), Germany